LICENSE
MANIFEST.in
README.rst
Singularity
doublet_detection.pdf
pyproject.toml
requirements.txt
setup.py
signature_score.pdf
.github/workflows/ci-test.yml
ext_modules/cfisher.c
ext_modules/cfisher.pxd
ext_modules/cfisher.pyx
ext_modules/diff_expr_utils.c
ext_modules/diff_expr_utils.pyx
ext_modules/fast_utils.c
ext_modules/fast_utils.pyx
pegasus/__init__.py
pegasus/__main__.py
pegasus/annotate_cluster/__init__.py
pegasus/annotate_cluster/annotate_cluster.py
pegasus/annotate_cluster/human_brain_cell_markers.json
pegasus/annotate_cluster/human_immune_cell_markers.json
pegasus/annotate_cluster/human_lung_cell_markers.json
pegasus/annotate_cluster/mouse_brain_cell_markers.json
pegasus/annotate_cluster/mouse_immune_cell_markers.json
pegasus/check_sample_indexes/Chromium-i7-Multiplex-Kit-N-Set-A-sample-indexes-plate.json
pegasus/check_sample_indexes/__init__.py
pegasus/check_sample_indexes/check_sample_indexes.py
pegasus/check_sample_indexes/chromium-shared-sample-indexes-plate.json
pegasus/commands/AnnotateCluster.py
pegasus/commands/Base.py
pegasus/commands/CheckSampleIndexes.py
pegasus/commands/Clustering.py
pegasus/commands/DeAnalysis.py
pegasus/commands/Enrichment.py
pegasus/commands/FindMarkers.py
pegasus/commands/Plotting.py
pegasus/commands/SCPOutput.py
pegasus/commands/SubClustering.py
pegasus/commands/View.py
pegasus/commands/__init__.py
pegasus/cylib/README.rst
pegasus/data_files/README.md
pegasus/data_files/apoptosis_human.gmt
pegasus/data_files/apoptosis_mouse.gmt
pegasus/data_files/cell_cycle_human.gmt
pegasus/data_files/cell_cycle_mouse.gmt
pegasus/data_files/gender_human.gmt
pegasus/data_files/gender_mouse.gmt
pegasus/data_files/mitochondrial_genes_human.gmt
pegasus/data_files/mitochondrial_genes_mouse.gmt
pegasus/data_files/ribosomal_genes_human.gmt
pegasus/data_files/ribosomal_genes_mouse.gmt
pegasus/misc/__init__.py
pegasus/misc/misc.py
pegasus/pipeline/__init__.py
pegasus/pipeline/pipeline.py
pegasus/plotting/__init__.py
pegasus/plotting/plot_library.py
pegasus/plotting/plot_utils.py
pegasus/tools/__init__.py
pegasus/tools/batch_correction.py
pegasus/tools/clustering.py
pegasus/tools/diff_expr.py
pegasus/tools/diffusion_map.py
pegasus/tools/doublet_detection.py
pegasus/tools/enrichment.py
pegasus/tools/gradient_boosting.py
pegasus/tools/graph_operations.py
pegasus/tools/hvf_selection.py
pegasus/tools/nearest_neighbors.py
pegasus/tools/net_regressor.py
pegasus/tools/nmf.py
pegasus/tools/preprocessing.py
pegasus/tools/pseudotime.py
pegasus/tools/signature_score.py
pegasus/tools/subcluster_utils.py
pegasus/tools/utils.py
pegasus/tools/visualization.py
pegasuspy.egg-info/PKG-INFO
pegasuspy.egg-info/SOURCES.txt
pegasuspy.egg-info/dependency_links.txt
pegasuspy.egg-info/entry_points.txt
pegasuspy.egg-info/requires.txt
pegasuspy.egg-info/top_level.txt