adjustText
anndata>=0.7.1
Cython
docopt
demuxEM
hnswlib
psutil
threadpoolctl
joblib>=0.14
lightgbm>=2.2.1
loompy
leidenalg
matplotlib>=3.7.0
natsort
numba
numpy>=2.0.2
pandas>=1.2.0
pegasusio>=0.10.0
pybind11
scikit-learn>=0.23.2
scikit-misc
scipy
seaborn>=0.13.0
setuptools
statsmodels
umap-learn>=0.5.2
wordcloud
xlsxwriter
igraph
zarr<3

[all]
fitsne
louvain
scanorama
torch
harmony-pytorch
nmf-torch
rpy2
forceatlas2-python
scvi-tools
pydeseq2
gseapy

[forceatlas]
forceatlas2-python

[louvain]
louvain

[mkl]
mkl

[pseudobulk]
pydeseq2
gseapy

[rpy2]
rpy2

[scanorama]
scanorama

[scvi]
scvi-tools

[torch]
torch
harmony-pytorch
nmf-torch

[tsne]
fitsne
