Metadata-Version: 2.1
Name: pegasuspy
Version: 0.16.3
Summary: Pegasus is a Python package for analyzing sc/snRNA-seq data of millions of cells
Home-page: https://github.com/klarman-cell-observatory/pegasus
Author: Yiming Yang, Joshua Gould and Bo Li
Author-email: cumulus-support@googlegroups.com
License: UNKNOWN
Keywords: single cell/nucleus genomics analysis
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Software Development :: Build Tools
Classifier: License :: OSI Approved :: BSD License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Framework :: Jupyter
Classifier: Natural Language :: English
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Operating System :: POSIX :: Linux
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: ~=3.5
Requires-Dist: anndata
Requires-Dist: Cython
Requires-Dist: docopt
Requires-Dist: fisher (>=0.1.9)
Requires-Dist: forceatlas2-python
Requires-Dist: hnswlib
Requires-Dist: joblib
Requires-Dist: lightgbm (==2.2.1)
Requires-Dist: loompy
Requires-Dist: louvain-github
Requires-Dist: matplotlib (>=2.0.0)
Requires-Dist: MulticoreTSNE-modified
Requires-Dist: natsort
Requires-Dist: numba
Requires-Dist: numpy
Requires-Dist: pandas (>=0.24)
Requires-Dist: plotly
Requires-Dist: pyarrow
Requires-Dist: pybind11
Requires-Dist: python-igraph
Requires-Dist: scikit-learn (>=0.21.3)
Requires-Dist: scikit-misc
Requires-Dist: scipy (<1.3)
Requires-Dist: scplot
Requires-Dist: seaborn
Requires-Dist: setuptools
Requires-Dist: statsmodels
Requires-Dist: tables
Requires-Dist: umap-learn (>=0.3.9)
Requires-Dist: xlsxwriter
Provides-Extra: fitsne
Requires-Dist: fitsne ; extra == 'fitsne'
Provides-Extra: leiden
Requires-Dist: leidenalg ; extra == 'leiden'
Provides-Extra: mkl
Requires-Dist: mkl ; extra == 'mkl'

====================================
Pegasus for Single Cell Analysis
====================================

|PyPI|

.. |PyPI| image:: https://img.shields.io/pypi/v/pegasuspy.svg
   :target: https://pypi.org/project/pegasuspy


Pegasus is a tool for analyzing transcriptomes of millions of single cells. It is a command line tool, a python package and a base for Cloud-based analysis workflows.

`Read documentation <http://pegasus.readthedocs.io>`__


