Metadata-Version: 2.1
Name: peepingtom
Version: 0.1.0
Summary: Python tool for interactive visualisation and analysis of tomography data.
Home-page: https://github.com/gutsche-lab/peepingtom/
Author: PeepingTom Team
Author-email: peepingtom_team@googlegroups.com
License: BSD 3-Clause
Platform: UNKNOWN
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Environment :: X11 Applications :: Qt
Classifier: Intended Audience :: Education
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: BSD License
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Topic :: Scientific/Engineering
Classifier: Topic :: Scientific/Engineering :: Visualization
Classifier: Topic :: Scientific/Engineering :: Information Analysis
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Utilities
Classifier: Operating System :: Microsoft :: Windows
Classifier: Operating System :: POSIX
Classifier: Operating System :: Unix
Classifier: Operating System :: MacOS
Requires-Python: >=3.8
Description-Content-Type: text/markdown
Requires-Dist: napari[all] (==0.4.2)
Requires-Dist: numpy (~=1.19)
Requires-Dist: pandas (~=1.1)
Requires-Dist: scipy (~=1.5)
Requires-Dist: seaborn (~=0.11)
Requires-Dist: dynamotable (~=0.2.3)
Requires-Dist: eulerangles (~=0.1.1)
Requires-Dist: mrcfile (~=1.1.2)
Requires-Dist: starfile (~=0.4.1)
Requires-Dist: emfile (~=0.2)

# PeepingTom

![Codecov branch](https://img.shields.io/codecov/c/github/gutsche-lab/peepingtom/master?label=codecov)
![PyPI](https://img.shields.io/pypi/v/peepingtom)
![PyPI - Python Version](https://img.shields.io/pypi/pyversions/peepingtom)

**PeepingTom** is a python tool enable easy interaction with cryo-ET and subtomogram averaging data. It leverages the fast, multi-dimensional [napari viewer](https://github.com/napari/napari) and the scientific python stack.

**DISCLAIMER**: this package is in early development phase. Expect frequent bugs and crashes. Feel free to report them on the issue tracker.

## Installation

```bash
pip install peepingtom
```

## Basic Usage

To look at some data:
```python
import peepingtom as pt
p = pt.peep('path_to_data.star')
p = pt.peep('path_to.mrc')
p = pt.peep('path_to_dir', recursive=True, filters='filename_regex')
```

## Tips
To navigate nested attributes in `Peeper`, you can use the convenient dot notation:
```python
p.datablocks.depictor.layers.visible  # visible status of all the napari layers
```


