README.md
setup.py
pedl/__init__.py
pedl/bert_for_distant_supervision.py
pedl/build_training_set.py
pedl/data_getter.py
pedl/database.py
pedl/predict.py
pedl/pubtator_elasticsearch.py
pedl/rebuild_pubtator_index.py
pedl/summarize.py
pedl/utils.py
pedl.egg-info/PKG-INFO
pedl.egg-info/SOURCES.txt
pedl.egg-info/dependency_links.txt
pedl.egg-info/entry_points.txt
pedl.egg-info/requires.txt
pedl.egg-info/top_level.txt
pedl/configs/__init__.py
pedl/configs/build_training_set.yaml
pedl/configs/predict.yaml
pedl/configs/pubtator_elaticsearch.yaml
pedl/configs/rebuild_pubtator_index.yaml
pedl/configs/summarize.yaml
pedl/configs/database/__init__.py
pedl/configs/database/default.yaml
pedl/configs/elastic/default.yaml
pedl/configs/entities/__init__.py
pedl/configs/entities/default.yaml
pedl/configs/hydra/__init__.py
pedl/configs/hydra/help/__init__.py
pedl/configs/hydra/help/build_training_set_help.yaml
pedl/configs/hydra/help/excel_summarize_help.yaml
pedl/configs/hydra/help/predict_help.yaml
pedl/configs/hydra/help/pubtator_elasticsearch_help.yaml
pedl/configs/hydra/help/rebuild_pubtator_index_help.yaml
pedl/configs/type/__init__.py
pedl/configs/type/drug_protein.yaml
pedl/configs/type/protein_protein.yaml
pedl/data/HOM_AllOrganism.rpt
pedl/data/geneid_to_name.json
pedl/data/uniprot2geneid.json
pedl/datasets/__init__.py
pedl/datasets/pedl_dataset.py