LICENSE.txt
MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
pear_ebi/__init__.py
pear_ebi/__main__.py
pear_ebi/test.py
pear_ebi/tree_emb_parser.py
pear_ebi/tree_set.py
pear_ebi.egg-info/PKG-INFO
pear_ebi.egg-info/SOURCES.txt
pear_ebi.egg-info/dependency_links.txt
pear_ebi.egg-info/entry_points.txt
pear_ebi.egg-info/not-zip-safe
pear_ebi.egg-info/requires.txt
pear_ebi.egg-info/top_level.txt
pear_ebi/calculate_distances/RF_pypy.py
pear_ebi/calculate_distances/__init__.py
pear_ebi/calculate_distances/hashrf.py
pear_ebi/calculate_distances/maple_RF.py
pear_ebi/calculate_distances/tqdist.py
pear_ebi/calculate_distances/HashRF/AUTHORS
pear_ebi/calculate_distances/HashRF/COPYING
pear_ebi/calculate_distances/HashRF/ChangeLog
pear_ebi/calculate_distances/HashRF/INSTALL
pear_ebi/calculate_distances/HashRF/Makefile
pear_ebi/calculate_distances/HashRF/Makefile.am
pear_ebi/calculate_distances/HashRF/Makefile.in
pear_ebi/calculate_distances/HashRF/NEWS
pear_ebi/calculate_distances/HashRF/README
pear_ebi/calculate_distances/HashRF/Random.cpp
pear_ebi/calculate_distances/HashRF/Random.o
pear_ebi/calculate_distances/HashRF/aclocal.m4
pear_ebi/calculate_distances/HashRF/config.h
pear_ebi/calculate_distances/HashRF/config.h.in
pear_ebi/calculate_distances/HashRF/config.hh
pear_ebi/calculate_distances/HashRF/config.hh.in
pear_ebi/calculate_distances/HashRF/config.log
pear_ebi/calculate_distances/HashRF/config.status
pear_ebi/calculate_distances/HashRF/configure
pear_ebi/calculate_distances/HashRF/configure.ac
pear_ebi/calculate_distances/HashRF/configure.lineno
pear_ebi/calculate_distances/HashRF/depcomp
pear_ebi/calculate_distances/HashRF/hash.cc
pear_ebi/calculate_distances/HashRF/hash.hh
pear_ebi/calculate_distances/HashRF/hash.o
pear_ebi/calculate_distances/HashRF/hashfunc.cc
pear_ebi/calculate_distances/HashRF/hashfunc.hh
pear_ebi/calculate_distances/HashRF/hashfunc.o
pear_ebi/calculate_distances/HashRF/hashrf
pear_ebi/calculate_distances/HashRF/hashrf.cc
pear_ebi/calculate_distances/HashRF/hashrf.o
pear_ebi/calculate_distances/HashRF/install-sh
pear_ebi/calculate_distances/HashRF/label-map.cc
pear_ebi/calculate_distances/HashRF/label-map.hh
pear_ebi/calculate_distances/HashRF/label-map.o
pear_ebi/calculate_distances/HashRF/missing
pear_ebi/calculate_distances/HashRF/newick.c
pear_ebi/calculate_distances/HashRF/newick.h
pear_ebi/calculate_distances/HashRF/newick.o
pear_ebi/calculate_distances/HashRF/stamp-h1
pear_ebi/calculate_distances/tqDist/._CMakeFiles
pear_ebi/calculate_distances/tqDist/._CMakeLists.txt
pear_ebi/calculate_distances/tqDist/._COPYING
pear_ebi/calculate_distances/tqDist/._COPYING.LESSER
pear_ebi/calculate_distances/tqDist/._CPackConfig.cmake
pear_ebi/calculate_distances/tqDist/._CPackSourceConfig.cmake
pear_ebi/calculate_distances/tqDist/._CTestTestfile.cmake
pear_ebi/calculate_distances/tqDist/._Makefile
pear_ebi/calculate_distances/tqDist/._README
pear_ebi/calculate_distances/tqDist/._bin
pear_ebi/calculate_distances/tqDist/._cmake_install.cmake
pear_ebi/calculate_distances/tqDist/._icon.ico
pear_ebi/calculate_distances/tqDist/._icon.jpg
pear_ebi/calculate_distances/tqDist/._tqDist
pear_ebi/calculate_distances/tqDist/._trees
pear_ebi/calculate_distances/tqDist/CMakeCache.txt
pear_ebi/calculate_distances/tqDist/CMakeLists.txt
pear_ebi/calculate_distances/tqDist/COPYING
pear_ebi/calculate_distances/tqDist/COPYING.LESSER
pear_ebi/calculate_distances/tqDist/CPackConfig.cmake
pear_ebi/calculate_distances/tqDist/CPackSourceConfig.cmake
pear_ebi/calculate_distances/tqDist/CTestTestfile.cmake
pear_ebi/calculate_distances/tqDist/Makefile
pear_ebi/calculate_distances/tqDist/README
pear_ebi/calculate_distances/tqDist/cmake_install.cmake
pear_ebi/calculate_distances/tqDist/icon.ico
pear_ebi/calculate_distances/tqDist/icon.jpg
pear_ebi/calculate_distances/tqDist/install_manifest.txt
pear_ebi/embeddings/Isomap_e.py
pear_ebi/embeddings/LLE_e.py
pear_ebi/embeddings/PCA_e.py
pear_ebi/embeddings/__init__.py
pear_ebi/embeddings/emb_quality.py
pear_ebi/embeddings/tSNE_e.py
pear_ebi/embeddings/graph/__init__.py
pear_ebi/embeddings/graph/graph.py
pear_ebi/interactive_mode/__init__.py
pear_ebi/interactive_mode/interactive.py
pear_ebi/subsample/__init__.py
pear_ebi/subsample/subsample.py
pear_ebi/subsample/subsample_multiprocess.py
test/__init__.py
test/test.py