Utilization
===========

There is 2 ways to use `PBxplore`:
  - command-line scripts
  - API

Command-line scripts
--------------------

PBxplore is bundle with a suite of command-line tools.
Once installed, they should be available in your ``$PATH``.
Here the list:

- :doc:`PBassign <PBassign>` assign :doc:`Protein Blocks (PBs) <intro_PB>`
  from a set of protein structures.
- :doc:`PBcount <PBcount>` computes the frequency of PBs at each position
  along the amino acid sequence.
- :doc:`PBstat <PBstat>` generates frequency and logo plots, and estimates the :ref:`Neq <Neq>`.


API
---

PBxplore is also a python library and provides an API to interfacing with Python applications.
You will find :doc:`here <api_cookbook>` a list of notebooks to help you use the API.
