LICENSE.MD
LICENSE.md
README.md
pyproject.toml
setup.py
patato/__init__.py
patato.egg-info/PKG-INFO
patato.egg-info/SOURCES.txt
patato.egg-info/dependency_links.txt
patato.egg-info/entry_points.txt
patato.egg-info/requires.txt
patato.egg-info/top_level.txt
patato/convenience_scripts/__init__.py
patato/convenience_scripts/convert_binary_to_hdf5.py
patato/convenience_scripts/convert_simpa.py
patato/convenience_scripts/copy_rois.py
patato/convenience_scripts/draw_roi.py
patato/convenience_scripts/generate_core.py
patato/convenience_scripts/import_clinical_data.py
patato/convenience_scripts/import_ithera_recons.py
patato/convenience_scripts/print_speeds.py
patato/convenience_scripts/process_msot.py
patato/convenience_scripts/rename_scan.py
patato/convenience_scripts/run_loads.txt
patato/convenience_scripts/scan_status.py
patato/convenience_scripts/split_rois.py
patato/convenience_scripts/tune_speed_of_sound.py
patato/convenience_scripts/unmix.py
patato/convenience_scripts/view.py
patato/convenience_scripts/data_analysis/__init__.py
patato/convenience_scripts/data_analysis/analyse_dce.py
patato/convenience_scripts/data_analysis/analyse_gas_challenge.py
patato/core/__init__.py
patato/core/image_structures/__init__.py
patato/core/image_structures/image_sequence.py
patato/core/image_structures/image_structure_types.py
patato/core/image_structures/pa_raw_data.py
patato/core/image_structures/pa_time_data.py
patato/core/image_structures/reconstruction_image.py
patato/core/image_structures/single_image.py
patato/core/image_structures/single_parameter_data.py
patato/core/image_structures/unmixed_image.py
patato/data/__init__.py
patato/data/get_example_datasets.py
patato/data/simulated_datasets.py
patato/experimental/__init__.py
patato/experimental/simulation/__init__.py
patato/io/__init__.py
patato/io/attribute_tags.py
patato/io/hdf5_converter.py
patato/io/msot_data.py
patato/io/hdf/__init__.py
patato/io/hdf/fileimporter.py
patato/io/hdf/hdf5_interface.py
patato/io/ipasc/__init__.py
patato/io/ipasc/ipasc_export.py
patato/io/ipasc/read_ipasc.py
patato/io/ithera/__init__.py
patato/io/ithera/read_ithera.py
patato/io/json/__init__.py
patato/io/json/json_reading.py
patato/io/simpa/__init__.py
patato/io/simpa/read_simpa.py
patato/processing/__init__.py
patato/processing/gpu_preprocessing_algorithm.py
patato/processing/jax_preprocessing_algorithm.py
patato/processing/preprocessing_algorithm.py
patato/processing/preprocessing_types.py
patato/processing/processing_algorithm.py
patato/recon/__init__.py
patato/recon/backprojection_opencl.py
patato/recon/backprojection_reference.py
patato/recon/reconstruction_algorithm.py
patato/recon/backprojection_implementation/__init__.py
patato/recon/backprojection_implementation/jax_implementation.py
patato/recon/model_based/__init__.py
patato/recon/model_based/cuda_implementation.py
patato/recon/model_based/cuda_implementation_refraction.py
patato/recon/model_based/generate_model.cpp
patato/recon/model_based/generate_model.cu
patato/recon/model_based/generate_model_refraction.cpp
patato/recon/model_based/generate_model_refraction.cu
patato/recon/model_based/model_based.py
patato/recon/model_based/numpy_implementation.py
patato/recon/numpy_backprojection/__init__.py
patato/recon/numpy_backprojection/recon.py
patato/recon/opencl_code/dascl.cl
patato/recon/opencl_code/dmascl.cl
patato/recon/recon_presets/backproject_clinical.json
patato/recon/recon_presets/backproject_clinical_xy.json
patato/recon/recon_presets/backproject_clinical_xz.json
patato/recon/recon_presets/backproject_clinical_yz.json
patato/recon/recon_presets/backproject_janek.json
patato/recon/recon_presets/backproject_janek_sos.json
patato/recon/recon_presets/backproject_noirf.json
patato/recon/recon_presets/backproject_standard.json
patato/recon/recon_presets/backproject_standard_sos.json
patato/recon/recon_presets/backproject_standard_water_correction.json
patato/recon/recon_presets/backproject_standard_water_correction_new_ithera.json
patato/recon/recon_presets/backproject_standard_xy.json
patato/recon/recon_presets/backproject_standard_xz.json
patato/recon/recon_presets/backproject_standard_yz.json
patato/unmixing/__init__.py
patato/unmixing/unmixer.py
patato/unmixing/spectra/__init__.py
patato/unmixing/spectra/spectra_files/ICG.csv
patato/unmixing/spectra/spectra_files/Melanin.csv
patato/unmixing/spectra/spectra_files/lipids.txt
patato/unmixing/spectra/spectra_files/prahl.txt
patato/unmixing/spectra/spectra_files/water.txt
patato/unmixing/spectra/spectra_files/water_long.txt
patato/unmixing/unmix_presets/haemoglobin.json
patato/unmixing/unmix_presets/haemoglobin_flow_phantom.json
patato/unmixing/unmix_presets/haemoglobin_flow_phantom_all_wl.json
patato/unmixing/unmix_presets/haemoglobin_melanin.json
patato/unmixing/unmix_presets/haemoglobin_mitox.json
patato/unmixing/unmix_presets/hb_emma_water.json
patato/unmixing/unmix_presets/hb_icg.json
patato/useful_utilities/__init__.py
patato/utils/__init__.py
patato/utils/mask_operations.py
patato/utils/pipeline.py
patato/utils/plotting.py
patato/utils/process_study.py
patato/utils/roi_operations.py
patato/utils/time_series_analysis.py
patato/utils/rois/__init__.py
patato/utils/rois/roi_type.py
patato/utils/tests/__init__.py
tests/test_backprojection.py
tests/test_image_sequence.py
tests/test_ithera.py
tests/test_model_based.py
tests/test_msot_data.py
tests/test_pipelines.py
tests/test_preprocessing_algorithm.py
tests/test_reconstruction_reading.py
tests/test_unmixing.py