CONTRIBUTING.rst
HISTORY.md
LICENSE
MANIFEST.in
README.md
README.rst
setup.cfg
setup.py
docs/Makefile
docs/conf.py
docs/contributing.rst
docs/installation.rst
docs/make.bat
parametrization_clean/__init__.py
parametrization_clean/app.py
parametrization_clean/cli.py
parametrization_clean/domain/__init__.py
parametrization_clean/domain/individual.py
parametrization_clean/domain/root_individual.py
parametrization_clean/domain/adaptation/__init__.py
parametrization_clean/domain/adaptation/factory.py
parametrization_clean/domain/adaptation/srinivas.py
parametrization_clean/domain/adaptation/strategy.py
parametrization_clean/domain/adaptation/xiao.py
parametrization_clean/domain/cost/__init__.py
parametrization_clean/domain/cost/factory.py
parametrization_clean/domain/cost/reax_error.py
parametrization_clean/domain/cost/strategy.py
parametrization_clean/domain/crossover/__init__.py
parametrization_clean/domain/crossover/double_pareto.py
parametrization_clean/domain/crossover/factory.py
parametrization_clean/domain/crossover/single_point.py
parametrization_clean/domain/crossover/strategy.py
parametrization_clean/domain/crossover/two_point.py
parametrization_clean/domain/crossover/uniform.py
parametrization_clean/domain/mutation/__init__.py
parametrization_clean/domain/mutation/central_uniform.py
parametrization_clean/domain/mutation/factory.py
parametrization_clean/domain/mutation/gauss.py
parametrization_clean/domain/mutation/nakata.py
parametrization_clean/domain/mutation/polynomial.py
parametrization_clean/domain/mutation/strategy.py
parametrization_clean/domain/neural_network/__init__.py
parametrization_clean/domain/neural_network/ann.py
parametrization_clean/domain/neural_network/extract_data.py
parametrization_clean/domain/neural_network/transform_data.py
parametrization_clean/domain/selection/__init__.py
parametrization_clean/domain/selection/factory.py
parametrization_clean/domain/selection/strategy.py
parametrization_clean/domain/selection/tournament.py
parametrization_clean/domain/utils/__init__.py
parametrization_clean/domain/utils/helpers.py
parametrization_clean/infrastructure/__init__.py
parametrization_clean/infrastructure/config/__init__.py
parametrization_clean/infrastructure/config/default.py
parametrization_clean/infrastructure/config/local.py
parametrization_clean/infrastructure/exception/__init__.py
parametrization_clean/infrastructure/exception/exception.py
parametrization_clean/infrastructure/presenter/__init__.py
parametrization_clean/infrastructure/presenter/file_writer.py
parametrization_clean/infrastructure/repository/__init__.py
parametrization_clean/infrastructure/repository/from_files.py
parametrization_clean/infrastructure/utils/__init__.py
parametrization_clean/infrastructure/utils/reax_converter.py
parametrization_clean/infrastructure/utils/reax_reader.py
parametrization_clean/infrastructure/utils/response_object.py
parametrization_clean/use_case/__init__.py
parametrization_clean/use_case/nested_ga_with_ann.py
parametrization_clean/use_case/population_initializer.py
parametrization_clean/use_case/population_propagator.py
parametrization_clean/use_case/population_writer.py
parametrization_clean/use_case/port/__init__.py
parametrization_clean/use_case/port/population_repository.py
parametrization_clean/use_case/port/settings_repository.py
parametrization_clean_cdaksha.egg-info/PKG-INFO
parametrization_clean_cdaksha.egg-info/SOURCES.txt
parametrization_clean_cdaksha.egg-info/dependency_links.txt
parametrization_clean_cdaksha.egg-info/entry_points.txt
parametrization_clean_cdaksha.egg-info/not-zip-safe
parametrization_clean_cdaksha.egg-info/top_level.txt
tests/.coverage
tests/__init__.py
tests/conftest.py
tests/test_parametrization_clean.py
tests/domain/test_individual.py
tests/domain/test_root_individual.py
tests/domain/adaptation/test_adaptation_factory.py
tests/domain/adaptation/test_srinivas.py
tests/domain/adaptation/test_xiao.py
tests/domain/cost/test_cost_factory.py
tests/domain/cost/test_reax_error.py
tests/domain/crossover/test_crossover_factory.py
tests/domain/crossover/test_double_pareto.py
tests/domain/crossover/test_single_point.py
tests/domain/crossover/test_two_point.py
tests/domain/crossover/test_uniform.py
tests/domain/mutation/test_central_uniform.py
tests/domain/mutation/test_gauss.py
tests/domain/mutation/test_mutation_factory.py
tests/domain/mutation/test_nakata.py
tests/domain/mutation/test_polynomial.py
tests/domain/neural_network/test_ann.py
tests/domain/neural_network/test_extract_data.py
tests/domain/neural_network/test_transform_data.py
tests/domain/selection/test_selection_factory.py
tests/domain/selection/test_tournament.py
tests/domain/utils/test_helpers.py
tests/fixtures/domain.py
tests/fixtures/infrastructure.py
tests/infrastructure/config/test_default.py
tests/infrastructure/config/test_local.py
tests/infrastructure/presenter/test_file_writer.py
tests/infrastructure/repository/test_from_files.py
tests/infrastructure/utils/__init__.py
tests/infrastructure/utils/test_converter.py
tests/infrastructure/utils/test_reaxff_reader.py
tests/infrastructure/utils/test_response_object.py
tests/integration/config/config.json
tests/integration/config/empty_config.json
tests/integration/presenter/00-ann-summary
tests/integration/presenter/00-gen-summary.txt
tests/integration/presenter/00-generation-vs-error.txt
tests/integration/presenter/test_file.txt
tests/integration/presenter/test_output.csv
tests/integration/presenter/generation-1/00-gen-summary.txt
tests/integration/reax_outputs/00-generation-vs-error.txt
tests/integration/reax_outputs/generation-1/00-gen-summary.txt
tests/integration/reax_outputs/generation-1/child-0/control
tests/integration/reax_outputs/generation-1/child-0/ffield
tests/integration/reax_outputs/generation-1/child-0/fort.99
tests/integration/reax_outputs/generation-1/child-0/geo
tests/integration/reax_outputs/generation-1/child-0/iopt
tests/integration/reax_outputs/generation-1/child-0/params
tests/integration/reax_outputs/generation-1/child-0/trainset.in
tests/integration/reax_outputs/generation-1/child-1/control
tests/integration/reax_outputs/generation-1/child-1/ffield
tests/integration/reax_outputs/generation-1/child-1/fort.99
tests/integration/reax_outputs/generation-1/child-1/geo
tests/integration/reax_outputs/generation-1/child-1/iopt
tests/integration/reax_outputs/generation-1/child-1/params
tests/integration/reax_outputs/generation-1/child-1/trainset.in
tests/integration/reax_outputs/generation-1/child-2/control
tests/integration/reax_outputs/generation-1/child-2/ffield
tests/integration/reax_outputs/generation-1/child-2/fort.99
tests/integration/reax_outputs/generation-1/child-2/geo
tests/integration/reax_outputs/generation-1/child-2/iopt
tests/integration/reax_outputs/generation-1/child-2/params
tests/integration/reax_outputs/generation-1/child-2/trainset.in
tests/integration/reax_outputs/generation-1/child-3/control
tests/integration/reax_outputs/generation-1/child-3/ffield
tests/integration/reax_outputs/generation-1/child-3/fort.99
tests/integration/reax_outputs/generation-1/child-3/geo
tests/integration/reax_outputs/generation-1/child-3/iopt
tests/integration/reax_outputs/generation-1/child-3/params
tests/integration/reax_outputs/generation-1/child-3/trainset.in
tests/integration/reax_outputs/generation-2/00-gen-summary.txt
tests/integration/reax_outputs/generation-2/child-0/control
tests/integration/reax_outputs/generation-2/child-0/ffield
tests/integration/reax_outputs/generation-2/child-0/fort.99
tests/integration/reax_outputs/generation-2/child-0/geo
tests/integration/reax_outputs/generation-2/child-0/iopt
tests/integration/reax_outputs/generation-2/child-0/params
tests/integration/reax_outputs/generation-2/child-0/trainset.in
tests/integration/reax_outputs/generation-2/child-1/control
tests/integration/reax_outputs/generation-2/child-1/ffield
tests/integration/reax_outputs/generation-2/child-1/fort.99
tests/integration/reax_outputs/generation-2/child-1/geo
tests/integration/reax_outputs/generation-2/child-1/iopt
tests/integration/reax_outputs/generation-2/child-1/params
tests/integration/reax_outputs/generation-2/child-1/trainset.in
tests/integration/reax_outputs/generation-2/child-2/control
tests/integration/reax_outputs/generation-2/child-2/ffield
tests/integration/reax_outputs/generation-2/child-2/fort.99
tests/integration/reax_outputs/generation-2/child-2/geo
tests/integration/reax_outputs/generation-2/child-2/iopt
tests/integration/reax_outputs/generation-2/child-2/params
tests/integration/reax_outputs/generation-2/child-2/trainset.in
tests/integration/reax_outputs/generation-2/child-3/control
tests/integration/reax_outputs/generation-2/child-3/ffield
tests/integration/reax_outputs/generation-2/child-3/fort.99
tests/integration/reax_outputs/generation-2/child-3/geo
tests/integration/reax_outputs/generation-2/child-3/iopt
tests/integration/reax_outputs/generation-2/child-3/params
tests/integration/reax_outputs/generation-2/child-3/trainset.in
tests/integration/reference_training_set/ReaxFF_ZnO_Raymand_with_Sglass_control_all_bounds/control
tests/integration/reference_training_set/ReaxFF_ZnO_Raymand_with_Sglass_control_all_bounds/exe
tests/integration/reference_training_set/ReaxFF_ZnO_Raymand_with_Sglass_control_all_bounds/ffield
tests/integration/reference_training_set/ReaxFF_ZnO_Raymand_with_Sglass_control_all_bounds/fort.99
tests/integration/reference_training_set/ReaxFF_ZnO_Raymand_with_Sglass_control_all_bounds/geo
tests/integration/reference_training_set/ReaxFF_ZnO_Raymand_with_Sglass_control_all_bounds/iopt
tests/integration/reference_training_set/ReaxFF_ZnO_Raymand_with_Sglass_control_all_bounds/params
tests/integration/reference_training_set/ReaxFF_ZnO_Raymand_with_Sglass_control_all_bounds/trainset.in
tests/use_case/test_nested_ga_with_ann.py
tests/use_case/test_population_initializer.py
tests/use_case/test_population_propagator.py
tests/use_case/test_population_writer.py