.gitignore
README.md
process.sh
setup.py
visualization.ipynb
src/papolarity/__init__.py
src/papolarity/__main__.py
src/papolarity/annotation.py
src/papolarity/cli.py
src/papolarity/clipping.py
src/papolarity/coreutils_sort.py
src/papolarity/coverage_profile.py
src/papolarity/fasta_reader.py
src/papolarity/gtf_parser.py
src/papolarity/gzip_utils.py
src/papolarity/nullcontext.py
src/papolarity/polarity_score.py
src/papolarity/profile_comparison.py
src/papolarity/segmentation.py
src/papolarity/tsv_reader.py
src/papolarity/utils.py
src/papolarity/version.py
src/papolarity.egg-info/PKG-INFO
src/papolarity.egg-info/SOURCES.txt
src/papolarity.egg-info/dependency_links.txt
src/papolarity.egg-info/entry_points.txt
src/papolarity.egg-info/requires.txt
src/papolarity.egg-info/top_level.txt
src/papolarity/bin/__init__.py
src/papolarity/bin/choose_best.py
src/papolarity/bin/clip_cds.py
src/papolarity/bin/compare_coverages.py
src/papolarity/bin/coverage_properties.py
src/papolarity/bin/extract_cds_annotation.py
src/papolarity/bin/flatten_coverage.py
src/papolarity/bin/get_coverage.py
src/papolarity/bin/join_tables.py
src/papolarity/bin/plot_distribution.py
src/papolarity/bin/pool_coverages.py
src/papolarity/bin/shrinkage.py
src/papolarity/dto/__init__.py
src/papolarity/dto/coding_transcript_info.py
src/papolarity/dto/coverage_comparison_stats.py
src/papolarity/dto/coverage_interval.py
src/papolarity/dto/dataclass_tsv_serializable.py
src/papolarity/dto/interval.py
src/papolarity/dto/transcript_coverage.py