anndata>=0.8.0
apsw
bbknn
cgatcore
drmaa
gevent
harmonypy
leidenalg
louvain
matplotlib<=3.7.3
mofapy2
mudata>=0.2.1
muon
numpy>=1.22.4
openpyxl
packaging
pandas>=1.0
paramiko
pep8
pysam
pynndescent
pytest
pyyaml
ruffus
scanorama
scanpy>=1.9.1
scib
seaborn<=0.12.2
scikit-misc
scirpy
scrublet
scvi-tools>=0.16.3
sqlalchemy

[notebook]
jupyter
jupyterlab

[pypi_upload]
twine
build

[spatial]
squidpy
cell2location
