anndata>=0.8.0
apsw
bbknn>=1.6.0
cgatcore
drmaa==0.7.9
gevent
harmonypy
leidenalg
louvain
matplotlib
mofapy2
mudata>=0.2.1
muon
numpy>=1.22.4
packaging
pandas>=1.0
paramiko
pep8
pysam
pytest
pyyaml
ruffus
scanorama
scanpy>=1.9.1
seaborn
scikit-misc
scirpy==0.12.2
scrublet
scvi-tools>=0.16.3
sqlalchemy

[notebook]
jupyter
jupyterlab
