# Copyright (c) 2008-2022 the MRtrix3 contributors.
#
# This Source Code Form is subject to the terms of the Mozilla Public
# License, v. 2.0. If a copy of the MPL was not distributed with this
# file, You can obtain one at http://mozilla.org/MPL/2.0/.
#
# Covered Software is provided under this License on an "as is"
# basis, without warranty of any kind, either expressed, implied, or
# statutory, including, without limitation, warranties that the
# Covered Software is free of defects, merchantable, fit for a
# particular purpose or non-infringing.
# See the Mozilla Public License v. 2.0 for more details.
#
# For more details, see http://www.mrtrix.org/.

# Lookup table for extracting the relevant grey matter parcellations from the default FreeSurfer segmentation (desikan_killiany)

0     ???     Unknown                         0   0   0   0

1     L.BSTS  ctx-lh-bankssts                 25  100 40  255
2     L.CACG  ctx-lh-caudalanteriorcingulate  125 100 160 255
3     L.CMFG  ctx-lh-caudalmiddlefrontal      100 25  0   255
4     L.CU    ctx-lh-cuneus                   220 20  100 255
5     L.EC    ctx-lh-entorhinal               220 20  10  255
6     L.FG    ctx-lh-fusiform                 180 220 140 255
7     L.IPG   ctx-lh-inferiorparietal         220 60  220 255
8     L.ITG   ctx-lh-inferiortemporal         180 40  120 255
9     L.ICG   ctx-lh-isthmuscingulate         140 20  140 255
10    L.LOG   ctx-lh-lateraloccipital         20  30  140 255
11    L.LOFG  ctx-lh-lateralorbitofrontal     35  75  50  255
12    L.LG    ctx-lh-lingual                  225 140 140 255
13    L.MOFG  ctx-lh-medialorbitofrontal      200 35  75  255
14    L.MTG   ctx-lh-middletemporal           160 100 50  255
15    L.PHIG  ctx-lh-parahippocampal          20  220 60  255
16    L.PaCG  ctx-lh-paracentral              60  220 60  255
17    L.POP   ctx-lh-parsopercularis          220 180 140 255
18    L.POR   ctx-lh-parsorbitalis            20  100 50  255
19    L.PTR   ctx-lh-parstriangularis         220 60  20  255
20    L.PCAL  ctx-lh-pericalcarine            120 100 60  255
21    L.PoCG  ctx-lh-postcentral              220 20  20  255
22    L.PCG   ctx-lh-posteriorcingulate       220 180 220 255
23    L.PrCG  ctx-lh-precentral               60  20  220 255
24    L.PCU   ctx-lh-precuneus                160 140 180 255
25    L.RACG  ctx-lh-rostralanteriorcingulate 80  20  140 255
26    L.RMFG  ctx-lh-rostralmiddlefrontal     75  50  125 255
27    L.SFG   ctx-lh-superiorfrontal          20  220 160 255
28    L.SPG   ctx-lh-superiorparietal         20  180 140 255
29    L.STG   ctx-lh-superiortemporal         140 220 220 255
30    L.SMG   ctx-lh-supramarginal            80  160 20  255
31    L.FP    ctx-lh-frontalpole              100 0   100 255
32    L.TP    ctx-lh-temporalpole             70  70  70  255
33    L.TTG   ctx-lh-transversetemporal       150 150 200 255
34    L.IN    ctx-lh-insula                   255 192 32  255

35    L.CER   Left-Cerebellum-Cortex          230 148 34  255

36    L.TH    Left-Thalamus                   0   118 14  255
36    L.TH    Left-Thalamus-Proper            0   118 14  255
37    L.CA    Left-Caudate                    122 186 220 255
38    L.PU    Left-Putamen                    236 13  176 255
39    L.PA    Left-Pallidum                   12  48  255 255
40    L.HI    Left-Hippocampus                220 216 20  255
41    L.AM    Left-Amygdala                   103 255 255 255
42    L.AC    Left-Accumbens-area             255 165 0   255

43    R.TH    Right-Thalamus                  0   118 14  255
43    R.TH    Right-Thalamus-Proper           0   118 14  255
44    R.CA    Right-Caudate                   122 186 220 255
45    R.PU    Right-Putamen                   236 13  176 255
46    R.PA    Right-Pallidum                  13  48  255 255
47    R.HI    Right-Hippocampus               220 216 20  255
48    R.AM    Right-Amygdala                  103 255 255 255
49    R.AC    Right-Accumbens-area            255 165 0   255

50    R.BSTS  ctx-rh-bankssts                 25  100 40  255
51    R.CACG  ctx-rh-caudalanteriorcingulate  125 100 160 255
52    R.CMFG  ctx-rh-caudalmiddlefrontal      100 25  0   255
53    R.CU    ctx-rh-cuneus                   220 20  100 255
54    R.EC    ctx-rh-entorhinal               220 20  10  255
55    R.FG    ctx-rh-fusiform                 180 220 140 255
56    R.IPG   ctx-rh-inferiorparietal         220 60  220 255
57    R.ITG   ctx-rh-inferiortemporal         180 40  120 255
58    R.ICG   ctx-rh-isthmuscingulate         140 20  140 255
59    R.LOG   ctx-rh-lateraloccipital         20  30  140 255
60    R.LOFG  ctx-rh-lateralorbitofrontal     35  75  50  255
61    R.LG    ctx-rh-lingual                  225 140 140 255
62    R.MOFG  ctx-rh-medialorbitofrontal      200 35  75  255
63    R.MTG   ctx-rh-middletemporal           160 100 50  255
64    R.PHIG  ctx-rh-parahippocampal          20  220 60  255
65    R.PaCG  ctx-rh-paracentral              60  220 60  255
66    R.POP   ctx-rh-parsopercularis          220 180 140 255
67    R.POR   ctx-rh-parsorbitalis            20  100 50  255
68    R.PTR   ctx-rh-parstriangularis         220 60  20  255
69    R.PCAL  ctx-rh-pericalcarine            120 100 60  255
70    R.PoCG  ctx-rh-postcentral              220 20  20  255
71    R.PCG   ctx-rh-posteriorcingulate       220 180 220 255
72    R.PrCG  ctx-rh-precentral               60  20  220 255
73    R.PCU   ctx-rh-precuneus                160 140 180 255
74    R.RACG  ctx-rh-rostralanteriorcingulate 80  20  140 255
75    R.RMFG  ctx-rh-rostralmiddlefrontal     75  50  125 255
76    R.SFG   ctx-rh-superiorfrontal          20  220 160 255
77    R.SPG   ctx-rh-superiorparietal         20  180 140 255
78    R.STG   ctx-rh-superiortemporal         140 220 220 255
79    R.SMG   ctx-rh-supramarginal            80  160 20  255
80    R.FP    ctx-rh-frontalpole              100 0   100 255
81    R.TP    ctx-rh-temporalpole             70  70  70  255
82    R.TTG   ctx-rh-transversetemporal       150 150 200 255
83    R.IN    ctx-rh-insula                   255 192 32  255

84    R.CER   Right-Cerebellum-Cortex         230 148 34  255

