MANIFEST.in
README.md
setup.py
pangtreebuild/__init__.py
pangtreebuild/__main__.py
pangtreebuild/logging.conf
pangtreebuild.egg-info/PKG-INFO
pangtreebuild.egg-info/SOURCES.txt
pangtreebuild.egg-info/dependency_links.txt
pangtreebuild.egg-info/requires.txt
pangtreebuild.egg-info/top_level.txt
pangtreebuild/affinity_tree/__init__.py
pangtreebuild/affinity_tree/builders.py
pangtreebuild/affinity_tree/parameters.py
pangtreebuild/affinity_tree/poa.py
pangtreebuild/affinity_tree/tree.py
pangtreebuild/affinity_tree/bin/blosum80.mat
pangtreebuild/affinity_tree/bin/poa
pangtreebuild/mafgraph/__init__.py
pangtreebuild/mafgraph/mafreader.py
pangtreebuild/mafgraph/sorter.py
pangtreebuild/mafgraph/weighted_edges.py
pangtreebuild/mafgraph/graph/Arc.py
pangtreebuild/mafgraph/graph/Block.py
pangtreebuild/mafgraph/graph/EdgeInfo.py
pangtreebuild/mafgraph/graph/SequenceInfo.py
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pangtreebuild/pangenome/DAGMaf.py
pangtreebuild/pangenome/__init__.py
pangtreebuild/pangenome/builder.py
pangtreebuild/pangenome/graph.py
pangtreebuild/pangenome/builders/__init__.py
pangtreebuild/pangenome/builders/dagmaf2poagraph.py
pangtreebuild/pangenome/builders/maf2dagmaf.py
pangtreebuild/pangenome/builders/maf2poagraph.py
pangtreebuild/pangenome/builders/po2poagraph.py
pangtreebuild/pangenome/parameters/__init__.py
pangtreebuild/pangenome/parameters/missings.py
pangtreebuild/pangenome/parameters/msa.py
pangtreebuild/serialization/__init__.py
pangtreebuild/serialization/fasta.py
pangtreebuild/serialization/json.py
pangtreebuild/serialization/po.py
pangtreebuild/tests/__init__.py
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pangtreebuild/tests/tests_pangenome/builders/maf_files_with_cycles_or_reversion/test_4_single_block_no_nucleotides.maf
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