ARIBA run with this command:
/home/linuxbrew/.linuxbrew/bin/ariba prepareref prepareref -f CARD_database.fa -m CARD_database.tsv CARD
from this directory: /home/schultzm/scripts/schultzm/development/pando_ruffus

ARIBA version: 2.6.1

External dependencies:
bowtie2	2.2.9	/home/linuxbrew/.linuxbrew/bin/bowtie2
cdhit	4.6	/home/linuxbrew/.linuxbrew/bin/cd-hit-est
nucmer	3.1	/home/linuxbrew/.linuxbrew/bin/nucmer

External dependencies OK: True

Python version:
3.5.2 (default, Nov  7 2016, 09:25:32) 
[GCC 5.3.0]

Python packages:
ariba	2.6.1	/home/linuxbrew/.linuxbrew/opt/python3/lib/python3.5/site-packages/ariba/__init__.py
dendropy	4.2.0	/home/linuxbrew/.linuxbrew/opt/python3/lib/python3.5/site-packages/dendropy/__init__.py
pyfastaq	3.14.0	/home/linuxbrew/.linuxbrew/opt/python3/lib/python3.5/site-packages/pyfastaq/__init__.py
pymummer	0.10.1	/home/linuxbrew/.linuxbrew/opt/python3/lib/python3.5/site-packages/pymummer/__init__.py
pysam	0.9.1.4	/home/linuxbrew/.linuxbrew/opt/python3/lib/python3.5/site-packages/pysam/__init__.py

Python packages OK: True

Everything looks OK: True
