MANIFEST.in
README
setup.py
bin/pancake
pancake/__init__.py
pancake/alignment.py
pancake/aliparser.py
pancake/chromosome.py
pancake/core.py
pancake/editops.py
pancake/fi.py
pancake/gv_graphs.py
pancake/pangenome.py
pancake/sf.py
pancake/singletons.py
pancake/utils.py
pancake.egg-info/PKG-INFO
pancake.egg-info/SOURCES.txt
pancake.egg-info/dependency_links.txt
pancake.egg-info/requires.txt
pancake.egg-info/top_level.txt
tests/genomes.txt
tests/out.delta
tests/tests.py