MANIFEST.in
README.md
requirements.txt
setup.cfg
setup.py
PanACoTA/__init__.py
PanACoTA/utils.py
PanACoTA/utils_argparse.py
PanACoTA/utils_pangenome.py
PanACoTA.egg-info/PKG-INFO
PanACoTA.egg-info/SOURCES.txt
PanACoTA.egg-info/dependency_links.txt
PanACoTA.egg-info/requires.txt
PanACoTA.egg-info/top_level.txt
PanACoTA/align_module/__init__.py
PanACoTA/align_module/alignment.py
PanACoTA/align_module/get_seqs.py
PanACoTA/align_module/pan_to_pergenome.py
PanACoTA/align_module/post_align.py
PanACoTA/align_module/prt2codon.awk
PanACoTA/annotate_module/__init__.py
PanACoTA/annotate_module/annotation_functions.py
PanACoTA/annotate_module/format_prodigal.py
PanACoTA/annotate_module/format_prokka.py
PanACoTA/annotate_module/general_format_functions.py
PanACoTA/annotate_module/genome_seq_functions.py
PanACoTA/corepers_module/__init__.py
PanACoTA/corepers_module/persistent_functions.py
PanACoTA/pangenome_module/__init__.py
PanACoTA/pangenome_module/mmseqs_functions.py
PanACoTA/pangenome_module/post_treatment.py
PanACoTA/pangenome_module/protein_seq_functions.py
PanACoTA/prepare_module/__init__.py
PanACoTA/prepare_module/download_genomes_func.py
PanACoTA/prepare_module/filter_genomes.py
PanACoTA/subcommands/__init__.py
PanACoTA/subcommands/align.py
PanACoTA/subcommands/annotate.py
PanACoTA/subcommands/corepers.py
PanACoTA/subcommands/pangenome.py
PanACoTA/subcommands/prepare.py
PanACoTA/subcommands/tree.py
PanACoTA/tree_module/__init__.py
PanACoTA/tree_module/fastme_func.py
PanACoTA/tree_module/fasttree_func.py
PanACoTA/tree_module/iqtree_func.py
PanACoTA/tree_module/quicktree_func.py
bin/PanACoTA