Metadata-Version: 2.1
Name: palmari
Version: 0.2.8
Summary: A pipeline for PALM movies analysis (pre-processing, localization, drifft correction, tracking)
Home-page: https://github.com/hippover/palmari
Author: Hippolyte Verdier
Author-email: hverdier@pasteur.fr
License: "CeCILL"
Project-URL: Bug Tracker, https://github.com/hippover/palmari/issues
Project-URL: Documentation, https://palmari.readthedocs.io/en/latest/
Project-URL: Source Code, https://github.com/hippover/palmari
Project-URL: User Support, https://github.com/hippover/palmari/issues
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Intended Audience :: Developers
Classifier: Framework :: napari
Classifier: Topic :: Software Development :: Testing
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Operating System :: OS Independent
Classifier: License :: OSI Approved :: CEA CNRS Inria Logiciel Libre License, version 2.1 (CeCILL-2.1)
Requires-Python: >=3.8
Description-Content-Type: text/markdown
License-File: LICENSE
License-File: AUTHORS.rst
Requires-Dist: click
Requires-Dist: dask (>=2022.1.0)
Requires-Dist: dask-image (>=2021.12.0)
Requires-Dist: imageio-ffmpeg
Requires-Dist: magicgui (>=0.5.0)
Requires-Dist: matplotlib (>=3.5)
Requires-Dist: munkres
Requires-Dist: napari
Requires-Dist: nd2reader
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: pyyaml
Requires-Dist: sklearn
Requires-Dist: scikit-image (>=0.18.3)
Requires-Dist: tiffile
Requires-Dist: toml
Requires-Dist: tqdm
Requires-Dist: trackpy (>=0.5.0)
Provides-Extra: testing
Requires-Dist: tox ; extra == 'testing'
Requires-Dist: PyQt5 ; extra == 'testing'
Requires-Dist: pytest ; extra == 'testing'
Requires-Dist: pytest-cov ; extra == 'testing'
Requires-Dist: pytest-qt ; extra == 'testing'

# Palmari

[![Documentation Status](https://readthedocs.org/projects/palmari/badge/?version=latest)](https://palmari.readthedocs.io/en/latest/?badge=latest)
[![Python Version](https://img.shields.io/pypi/pyversions/palmari.svg?color=green)](https://python.org)
[![tests](https://github.com/hippover/palmari/workflows/tests/badge.svg)](https://github.com/hippover/palmari/actions)
[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/palmari)](https://napari-hub.org/plugins/palmari)
[![License](https://img.shields.io/pypi/l/palmari.svg?color=green)](https://github.com/hippover/palmari/raw/main/LICENSE)

A processing pipeline for PALM movies analysis (pre-processing, localization, drift correction, tracking).

Check out the [documentation] to get started.

![napari_plugin](docs/images/plugin_steps.png "Fine-tune your pipelines on a movie, run it on a batch easily !")

----------------------------------

This [napari] plugin was generated with [Cookiecutter] using [@napari]'s [cookiecutter-napari-plugin] template.

<!--
Don't miss the full getting started guide to set up your new package:
https://github.com/napari/cookiecutter-napari-plugin#getting-started

and review the napari docs for plugin developers:
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## Installation

You can install `palmari` via [pip]:

    pip install palmari



To install latest development version :

    pip install git+https://github.com/hippover/palmari.git


## Contributing

Contributions are very welcome. Tests can be run with [tox], please ensure
the coverage at least stays the same before you submit a pull request.

## License

Distributed under the terms of the [CeCILL] license.

## Issues

If you encounter any problems, please [file an issue] along with a detailed description.

[napari]: https://github.com/napari/napari
[Cookiecutter]: https://github.com/audreyr/cookiecutter
[@napari]: https://github.com/napari
[MIT]: http://opensource.org/licenses/MIT
[BSD-3]: http://opensource.org/licenses/BSD-3-Clause
[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt
[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt
[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0
[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt
[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin

[file an issue]: https://github.com/hippover/palmari/issues

[napari]: https://github.com/napari/napari
[tox]: https://tox.readthedocs.io/en/latest/
[pip]: https://pypi.org/project/pip/
[PyPI]: https://pypi.org/
[CeCILL]: http://cecill.info/index.en.html
[documentation]: https://palmari.readthedocs.io/en/latest/
