LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
src/oxDNA_analysis_tools/__init__.py
src/oxDNA_analysis_tools/align_trajectory.py
src/oxDNA_analysis_tools/anm_parametrize.py
src/oxDNA_analysis_tools/backbone_flexibility.py
src/oxDNA_analysis_tools/bond_analysis.py
src/oxDNA_analysis_tools/centroid.py
src/oxDNA_analysis_tools/clustering.py
src/oxDNA_analysis_tools/compute_deviations.py
src/oxDNA_analysis_tools/compute_mean.py
src/oxDNA_analysis_tools/config.py
src/oxDNA_analysis_tools/contact_map.py
src/oxDNA_analysis_tools/distance.py
src/oxDNA_analysis_tools/duplex_angle_finder.py
src/oxDNA_analysis_tools/duplex_angle_plotter.py
src/oxDNA_analysis_tools/eRMSD.py
src/oxDNA_analysis_tools/entry.py
src/oxDNA_analysis_tools/forces2pairs.py
src/oxDNA_analysis_tools/generate_force.py
src/oxDNA_analysis_tools/mean2dat.py
src/oxDNA_analysis_tools/minify.py
src/oxDNA_analysis_tools/multidimensional_scaling_mean.py
src/oxDNA_analysis_tools/output_bonds.py
src/oxDNA_analysis_tools/p_align.py
src/oxDNA_analysis_tools/pca.py
src/oxDNA_analysis_tools/pca_experimental.py
src/oxDNA_analysis_tools/plot_energy.py
src/oxDNA_analysis_tools/subset_trajectory.py
src/oxDNA_analysis_tools/superimpose.py
src/oxDNA_analysis_tools.egg-info/PKG-INFO
src/oxDNA_analysis_tools.egg-info/SOURCES.txt
src/oxDNA_analysis_tools.egg-info/dependency_links.txt
src/oxDNA_analysis_tools.egg-info/entry_points.txt
src/oxDNA_analysis_tools.egg-info/requires.txt
src/oxDNA_analysis_tools.egg-info/top_level.txt
src/oxDNA_analysis_tools/UTILS/__init__.py
src/oxDNA_analysis_tools/UTILS/all_vectors.py
src/oxDNA_analysis_tools/UTILS/base.py
src/oxDNA_analysis_tools/UTILS/base_array.py
src/oxDNA_analysis_tools/UTILS/geom.py
src/oxDNA_analysis_tools/UTILS/micha_reader.py
src/oxDNA_analysis_tools/UTILS/model.h
src/oxDNA_analysis_tools/UTILS/parallelize_erik_multifile.py
src/oxDNA_analysis_tools/UTILS/parallelize_erik_onefile.py
src/oxDNA_analysis_tools/UTILS/parallelize_lorenzo_multifile.py
src/oxDNA_analysis_tools/UTILS/parallelize_lorenzo_onefile.py
src/oxDNA_analysis_tools/UTILS/readers.py
src/oxDNA_analysis_tools/UTILS/rna_model.h
src/oxDNA_analysis_tools/external_force_utils/__init__.py
src/oxDNA_analysis_tools/external_force_utils/exclude_force.py
src/oxDNA_analysis_tools/external_force_utils/force_reader.py
src/oxDNA_analysis_tools/external_force_utils/forces.py