from .Overhang import Overhang, generate_all_overhangs
from .OverhangSet import OverhangSet
from .tools import (
    order_overhangs,
    generate_overhang_pairs,
    subset_data_for_overhang,
    plot_data,
    filter_overhangs,
)
from .reports import write_pdf_report, write_overhangset_report

DISASTANDARD = [
    "AATT",  # palindromic error
    "TAGG",
    "CCTA",  # reverse complements error
    "TCCG",
    "TCCG",  # duplicate overhangs error
    "CACC",  # weakest correct warning
    "GACT",  # self-misannealing warning
    "ATGG",
    "CCAG",  # misannealing pair warning
]
