AUTHORS.rst
CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.rst
requirements.txt
setup.cfg
setup.py
docs/Makefile
docs/authors.rst
docs/conf.py
docs/contributing.rst
docs/history.rst
docs/hmmscan.rst
docs/index.rst
docs/installation.rst
docs/make.bat
docs/readme.rst
docs/tutorial.rst
docs/usage.rst
docs/releases/template.rst
docs/releases/v0.1.0.rst
docs/releases/v0.2.0.rst
docs/releases/v0.2.1.rst
docs/releases/v0.2.2.rst
docs/releases/v0.2.3.rst
docs/releases/v0.2.4.rst
docs/releases/v0.2.5.rst
docs/releases/v0.2.6.rst
docs/releases/v0.2.7.rst
docs/releases/v0.2.8.rst
outrigger/__init__.py
outrigger/commandline.py
outrigger/common.py
outrigger/region.py
outrigger/util.py
outrigger.egg-info/PKG-INFO
outrigger.egg-info/SOURCES.txt
outrigger.egg-info/dependency_links.txt
outrigger.egg-info/entry_points.txt
outrigger.egg-info/not-zip-safe
outrigger.egg-info/requires.txt
outrigger.egg-info/top_level.txt
outrigger/index/__init__.py
outrigger/index/adjacencies.py
outrigger/index/events.py
outrigger/io/__init__.py
outrigger/io/gtf.py
outrigger/io/star.py
outrigger/psi/__init__.py
outrigger/psi/compute.py
outrigger/validate/__init__.py
outrigger/validate/check_splice_sites.py