orthoflow/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
orthoflow/config/config.yml,sha256=KGhj9HuSeYE4sxU8JYqgaFteTXOFp8x1j8HnXV7xrug,3129
orthoflow/main.py,sha256=jI7GEC0nEz-OGt-rj9wpAzLMtsHJMsrfJQBVz-fJWGY,3437
orthoflow/profiles/local/config.yaml,sha256=VWRGBlvLo8AkJSOoSu_bOeJqaZSsq7aeterSo3CVfdA,92
orthoflow/profiles/slurm/config.yaml,sha256=gaZtqY3p5n0zVyrSfG_r7ccuM5kBePD8LaxjsgqHMGQ,984
orthoflow/profiles/slurm/slurm-cancel,sha256=dd2CQMFSj23kdLbZTgkxThgOkZSLTVz7l6fPAG8BT4Q,50
orthoflow/workflow/Snakefile,sha256=WxdJRQrAe7WCo7FHz0bg4ehJWfqRXEW7Is0yY9FaYvU,4202
orthoflow/workflow/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
orthoflow/workflow/bibs/TranslatorX.nbib,sha256=Achz49unN6eFahKSszwvfbihSszCxCak1zEppXMhY7M,2868
orthoflow/workflow/bibs/astral-iii.ris,sha256=Y17aii9VzXm_5PRvTsZRkGm8ao3oORjH1x4-azrhcFM,853
orthoflow/workflow/bibs/biokit.bib,sha256=E4ycSQX3oyvhm2UeXi_4ojd49bX3N_ostf2g4bY9dvU,595
orthoflow/workflow/bibs/biopython.bib,sha256=kHV-ahCyn6bCr4xgF8GZrMgEdSkFU_-a-euP-Z9p8VE,1560
orthoflow/workflow/bibs/clipkit.bib,sha256=A_pKK7INCbwSNLwHjvHiyty_B6Ik4zp54QNURibzJJQ,1896
orthoflow/workflow/bibs/ete.ris,sha256=1OcM9MD0S50CtwVcxThwB1HwGOhd6ZI6d-3-buyOOJ8,1019
orthoflow/workflow/bibs/gbseqextractor.bib,sha256=p9bYLk28I3SazdvDeI_e37Kdb5JAPBXDZQX3YH_aZ6A,303
orthoflow/workflow/bibs/iqtree2.bib,sha256=DqXy3Dno9P094Monn6tzOJKaLMh7SFpcEZk4WnyeoTA,1203
orthoflow/workflow/bibs/mafft7.bib,sha256=T1FYq5NeGgkP9gXMcoTYjtuRDzKF862TM8TYJR0I-a4,1202
orthoflow/workflow/bibs/modelfinder.ris,sha256=yYuzqAV1KJ_qsshxijrMF6dfEnSnYGpjPyemsbUDjP4,523
orthoflow/workflow/bibs/orthofinder.ris,sha256=CUevRihyToMAH_5zD7uCBAufAzQH8-p37PeCz-Dm2vU,1115
orthoflow/workflow/bibs/orthofisher.nbib,sha256=dvlps5IgK-iUjVRcqmhbp06_vmq16BE_HcNCI1eMI0U,3107
orthoflow/workflow/bibs/phykit.bib,sha256=HfQLvUm4w_eR3QeC-uJ36P62TnOBxnUqlH5dQXbcwDo,2318
orthoflow/workflow/bibs/toytree.bib,sha256=YH3dW9aeW0j3EC9dh6c6nfh_iMg7Rbbz0KRyHFC4WB0,291
orthoflow/workflow/bibs/ultrafast-bootstrap.bib,sha256=1PnmNdj8BQm9kGomihiqXmWiLIHQSlMosMnn8NiLqXs,1510
orthoflow/workflow/envs/astral.yaml,sha256=l2XcAIQYf_EQTsUp5xVkOziSTI1T0BmPlCWzU9DvWWA,74
orthoflow/workflow/envs/biokit.yaml,sha256=AwNKwQyw-6CSKtAyZtrqfoN3aaHylxB4k1Su2gfqwXw,110
orthoflow/workflow/envs/biopython.yaml,sha256=TAzdnBYZO3G4m0jF1zVIGJs-2zNTeMpBHYXqF9OtE60,64
orthoflow/workflow/envs/clipkit.yaml,sha256=VxoarK8VGs6GgbNidVHnCR_iP-sxNlDpKQBf0BxVNTI,107
orthoflow/workflow/envs/ete.yaml,sha256=ZoL_1P1m_lJgRlxuJUNJsceMl3KLAZo5Ce6em7qYx_8,85
orthoflow/workflow/envs/iqtree.yaml,sha256=ctEJLRCKuLthpHSu7ty99aPSd49r1EA19IFYjbjG9p4,103
orthoflow/workflow/envs/jinja.yaml,sha256=bPYDwyu9d_io7xoRN8IHtlcyWjzF4TDG90d9d-udqjU,87
orthoflow/workflow/envs/joblib.yaml,sha256=WkF6gid1msOov7vJnF4GCK4Ni6WPQBR4_zEerE3AIa8,115
orthoflow/workflow/envs/mafft.yaml,sha256=nuoia5zcY5fabtv-_a8RksNQQsO_ZGF8oTcxGx_UrNM,81
orthoflow/workflow/envs/matplotlib.yaml,sha256=yEUEByrKNY_8GMgOLcWs9tpdMVGypYNVYUM5kRR8UdE,54
orthoflow/workflow/envs/orthofinder.yaml,sha256=5s9g98ofcnfv0TeEVKQhiPwmi3l_2mjCTfeiY-_yM2k,93
orthoflow/workflow/envs/orthofisher.yaml,sha256=aQONJWX9A_bvNs5hJXdY0J_tvoJ3qeFWOJ6N2ECtGUY,157
orthoflow/workflow/envs/orthosnap.yaml,sha256=RTL81Pxki9a1VbHGYPkwHAGBn8nYfWq3kGpS45zwqic,298
orthoflow/workflow/envs/perl.yaml,sha256=7l_YXRwlYeZ7y2MrhzwP7TY4E9OmQxhEUYi_E_1gfDk,49
orthoflow/workflow/envs/phykit.yaml,sha256=7izUiIeJPVSl0d80cK2Mu6M52rVcRZmc5p9KpCLIbNA,108
orthoflow/workflow/envs/samtools.yaml,sha256=cZN5a0uevACNb3tlgN35TYE-1h_-ivS5T-VxJZZbnnk,85
orthoflow/workflow/envs/seaborn.yaml,sha256=tBfMlwz76rhl1hMWIDf2oKKyV-2pFWjA5eTyxjx3cQI,51
orthoflow/workflow/envs/summary.yaml,sha256=nZoJbXqLWqTO3QD49TZ19z1_lkSyxbDqXp2cFm5ZxV4,255
orthoflow/workflow/envs/toytree.yaml,sha256=jVgqbnSEKwcm1OVK1KmQ-VpERJbDmc6YZQkyye_rf5w,146
orthoflow/workflow/envs/typer.yaml,sha256=XFypJ1PKXeEcPvx69DZHxijJ9-5Y0V8dwhhuvjx516o,97
orthoflow/workflow/report/alignment.html,sha256=ZrtYJB9vT3fRbYg-5JXCvpVpuAtNFekvOajDfBxgFdA,993
orthoflow/workflow/report/alignment_summary.rst,sha256=Cs-wN6zHsYYmnjD4ZU3_s5cKNNifL8bXMfSg2Qzxwt8,35
orthoflow/workflow/report/assets/css/bootstrap.cosmo.min.css,sha256=1QMn0orFWnN6ZvqKlZCpabeY9PAvvIFcVndIneDMNeU,186259
orthoflow/workflow/report/assets/img/orthoflow-favicon.png,sha256=OkWQgbNFotTmQu-JVT3OOmUgbGkQs81sQOjZ2305hPM,1411
orthoflow/workflow/report/assets/img/orthoflow-logo-black.svg,sha256=E19KTi1Qg5qkaY2N3SkoSQQlkk0uCCxz-1_jnk1byso,34920
orthoflow/workflow/report/assets/img/orthoflow-logo-blue.svg,sha256=39JJ6h1mIFlKuf6I5P_CafE980npVf26yAX1knzrXqs,34941
orthoflow/workflow/report/assets/img/orthoflow-logo-white-on-blue.svg,sha256=OZJQtpTdtnWm0_d5j9JVpx4WOE7En-q3ZkRGjheZxX8,35359
orthoflow/workflow/report/assets/img/orthoflow-logo.svg,sha256=klTyEjKuUlBIVSIoWG_9f5ohpk4sxNdzeJhxGgDjog8,35282
orthoflow/workflow/report/assets/vendor/bootstrap-5.0.2.min.js,sha256=fh8VA992XMpeCZiRuU4xii75UIG6KvHrbUF8yIS_2_4,78743
orthoflow/workflow/report/assets/vendor/feather-4.28.0.min.js,sha256=XfzdiC-S1keia-s9l07y7ye5a874sBq67zK4u7LTjvk,75779
orthoflow/workflow/report/assets/vendor/prism-1.23.0.min.js,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
orthoflow/workflow/report/assets/vendor/prism-coy-1.23.0.min.css,sha256=gkHLZLptZZHaBY-jqrRkAVzOGfMa4HBhSCJteem8wy8,3061
orthoflow/workflow/report/assets/vendor/prismjs-bibtex-2.0.1.js,sha256=C21978BGfyfGR6uCBoWoRGUBgraY7ukGCXhNcR6caxk,1412
orthoflow/workflow/report/bibliography-content.bib,sha256=jdyHcXVBg1AP44dMhVwyPFnCkRA_gNJolSCLqQi-1fc,11819
orthoflow/workflow/report/bibliography-content.html,sha256=9GMLYieloefT_zb-UCGhXfZ-Vaqil-m0Ih2hEuyeYXI,6088
orthoflow/workflow/report/bibliography.html,sha256=UmoAGPLwbyENkH8oa3OIIn55jln4szKy41LOE7iul8A,831
orthoflow/workflow/report/genetree.html,sha256=smMbrV2Km3A49ctxioxFWlfOb-GifWC2GlfpUJCX0XQ,4126
orthoflow/workflow/report/intake.html,sha256=5JSNiOTAwrksrmA_dmH-6kwtJDduM2fyf75deg1tbbg,77
orthoflow/workflow/report/orthofinder.html,sha256=j3Hf8vZC5nB1x6JpPLMS4eeXuh_b3ffRGeDmTS_5Z9Q,2316
orthoflow/workflow/report/orthofisher.html,sha256=gvg-nwsBYwB7HVlPfRzDBYvkKONKh674jzKaUWb0VEU,21
orthoflow/workflow/report/overview.html,sha256=hK1lMyp3M2HMd1yZawuINPWTPkLAflE0hjhZpw8q8_s,18
orthoflow/workflow/report/report-template.html,sha256=tiPmYSf6nfkYkwX1ExlZGETcFmjKmCGl5bP2ZbpRaw4,12857
orthoflow/workflow/report/supermatrix.html,sha256=enMqGK0SMIYk_ptnU8mWnl868VtRI708PLrIroPQbps,2486
orthoflow/workflow/report/supertree.html,sha256=EIqlO1V0pc66-ErJMOVZuQga3XKTF5idA2wdhEMiprk,86
orthoflow/workflow/report/warnings.html,sha256=Xm3uOcNHZakrpD-bmDJdgEKWdDoQvv5AwzrlP7m-Gjo,279
orthoflow/workflow/report/workflow.html,sha256=-9OzbpbY40wsGzmY0Yd8A7o2qqNGsGVRqvADJbRPRXI,52
orthoflow/workflow/rules/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
orthoflow/workflow/rules/alignment.smk,sha256=CKzDI7QC6gP1ypSZSVaMR4lJJsVEGD-Hy__5Q_O-9yg,9814
orthoflow/workflow/rules/gene_tree.smk,sha256=hFkmb1q7mTuqRr0oejS2A8GOEHmCfOf_qM60-bfOe2Y,2857
orthoflow/workflow/rules/intake.smk,sha256=nqTmVZbgXYWX2kwwPSJl27YtryVNPmEFSgK8n_G0MTM,3297
orthoflow/workflow/rules/intake_utils.py,sha256=Z6yspeJRxaHW7PzXDso217NlPtras-9Muwk8r3uTXoI,15187
orthoflow/workflow/rules/orthofinder.smk,sha256=SjJ0JgmfCWrZp772qnlKpMxJQMpU-xz1EWwlay-TF84,7004
orthoflow/workflow/rules/orthofisher.smk,sha256=U1VfoQ_Vj91nqKbs4LEGQjxVoAEyJ05wh9Q7vPn76fI,2748
orthoflow/workflow/rules/report.smk,sha256=FNwEVD_2Ec7riKIVXg-IRm8TVquahyjb0uXPVOlMti8,5753
orthoflow/workflow/rules/summary.smk,sha256=H-Yvv0d3oB9XhVsrdg5MfVUrxSCXSPPOIy7O7trGMAg,1354
orthoflow/workflow/rules/supermatrix.smk,sha256=ejOJLKkCQS7g1_PPbYOSg05b4gwBORLbMxVwW10sr8M,4430
orthoflow/workflow/rules/supertree.smk,sha256=yMyYKyk6t5BD7HvSeNYDRaTK6-taQu3lktsXuHuzT4Q,2546
orthoflow/workflow/scripts/add_taxon.py,sha256=Rqodliq0TZa2z8hwJRxTp6zwpW0Pg38G0vVxRauC9Ic,1286
orthoflow/workflow/scripts/check_config.py,sha256=9bCiuJ44iMnpisYO6dFtYrLNDOaWw-hnFytTz6GLq-0,3429
orthoflow/workflow/scripts/extract_cds.py,sha256=rxsp7YIrzA7g4tb-FczN50_0ktcDmC9lH4v4dS8D0w8,3254
orthoflow/workflow/scripts/filter_SCOG.pl,sha256=d2AWfya9pAAWetx8B_8mZ4j8dyWuCTSxTdWE-9wcUvE,538
orthoflow/workflow/scripts/filter_alignments.py,sha256=bpXm3TrOskfaZlM67LsLwVeh1HXdiCqlrr4PKMpQuZM,4095
orthoflow/workflow/scripts/filter_separate_ogs.pl,sha256=JtbBvz8OAs9d8yqsWr4m3jykNDz5lhn0WEsHfpl2nb0,1203
orthoflow/workflow/scripts/generate_orthosnap_input.py,sha256=sUP6aVKb8cf0C50saG7aiRv-oc6lxM4vIvWnruG11r4,1044
orthoflow/workflow/scripts/get_cds_seq.py,sha256=gbpQNaTfi2jVQ1gpgOGKHexLXMy2lBCbrjPmQeHm-PI,2305
orthoflow/workflow/scripts/matching_cds.py,sha256=tFqLzrIJggVQateKsDvLXRFemfxKPPuYRxPWwSaQCT8,3157
orthoflow/workflow/scripts/orthofinder_report_components.py,sha256=Wu5e-61hyazkhoI-7Q6dQyYYbOwvVp8c82PmBNqfJeU,2248
orthoflow/workflow/scripts/orthogroup_classification.py,sha256=OoXKAyw6g1CMMIFEMh0W8FX2pKLAyhP56gcHSVa4TbE,2909
orthoflow/workflow/scripts/prepare_input.py,sha256=xo8ZL4DNkmM9yMnYR6JOCGc6NsDYzYUBJUiyUnTWYWk,1159
orthoflow/workflow/scripts/render_tree.py,sha256=SinNAp79aeC7_57g1BniUpke-QLO0_VVSlg2gstrRlQ,1251
orthoflow/workflow/scripts/report.py,sha256=b8bzf2Tn5EJ5vfiVP1uIHMVfhP95ktEDQ7ss_Aoj42o,1082
orthoflow/workflow/scripts/summarize_information_content.py,sha256=rOa8-P4NjzPD5nG_rMLv3o52GVRdVdpl5WZW6z16eyA,6445
orthoflow/workflow/scripts/taxon_only.py,sha256=EXcKCqx9L8-6UxnVnmpw1yF1K4m9jxf28rUaRrVd5pI,1131
orthoflow-0.2.0.dist-info/LICENSE,sha256=4CI1yMpZgWXkKlVev0M2vgvkDRaGOyKd-_FsKAoe8T0,11334
orthoflow-0.2.0.dist-info/METADATA,sha256=fQAKLj9NS_CHkhlRkGxu7bRQWhoYBcQCw1EqTRD9cXM,8882
orthoflow-0.2.0.dist-info/WHEEL,sha256=Zb28QaM1gQi8f4VCBhsUklF61CTlNYfs9YAZn-TOGFk,88
orthoflow-0.2.0.dist-info/entry_points.txt,sha256=ncxzFWj7XTEpDhSxeUZ8_GtdZmYk3KwE94s5vjXomAE,48
orthoflow-0.2.0.dist-info/RECORD,,
