.gitignore
CODE_OF_CONDUCT.md
CONTRIBUTING.md
LICENSE
MANIFEST.in
README.md
env_create.sh
mkdocs.yml
pyproject.toml
setup.cfg
setup.py
./organelle_segmenter_plugin/__init__.py
./organelle_segmenter_plugin/_dock_widget.py
./organelle_segmenter_plugin/_reader.py
./organelle_segmenter_plugin/_style.py
./organelle_segmenter_plugin/_version.py
./organelle_segmenter_plugin/napari.yaml
./organelle_segmenter_plugin/_tests/__init__.py
./organelle_segmenter_plugin/_tests/conftest.py
./organelle_segmenter_plugin/_tests/mocks.py
./organelle_segmenter_plugin/_tests/style_test.py
./organelle_segmenter_plugin/_tests/controller/__init__.py
./organelle_segmenter_plugin/_tests/controller/batch_processing_controller_test.py
./organelle_segmenter_plugin/_tests/controller/workflow_select_controller_test.py
./organelle_segmenter_plugin/_tests/controller/workflow_steps_controller_test.py
./organelle_segmenter_plugin/_tests/core/__init__.py
./organelle_segmenter_plugin/_tests/core/application_test.py
./organelle_segmenter_plugin/_tests/core/controller_test.py
./organelle_segmenter_plugin/_tests/core/layer_reader_test.py
./organelle_segmenter_plugin/_tests/core/router_test.py
./organelle_segmenter_plugin/_tests/core/state_test.py
./organelle_segmenter_plugin/_tests/core/view_manager_test.py
./organelle_segmenter_plugin/_tests/core/view_test.py
./organelle_segmenter_plugin/_tests/core/viewer_abstraction_test.py
./organelle_segmenter_plugin/_tests/model/__init__.py
./organelle_segmenter_plugin/_tests/model/segmenter_model_test.py
./organelle_segmenter_plugin/_tests/util/__init__.py
./organelle_segmenter_plugin/_tests/util/convert_test.py
./organelle_segmenter_plugin/_tests/util/lazy_test.py
./organelle_segmenter_plugin/_tests/view/__init__.py
./organelle_segmenter_plugin/_tests/view/_main_template_test.py
./organelle_segmenter_plugin/_tests/view/batch_processing_view_test.py
./organelle_segmenter_plugin/_tests/view/workflow_select_view_test.py
./organelle_segmenter_plugin/_tests/view/workflow_steps_view_test.py
./organelle_segmenter_plugin/_tests/widgets/__init__.py
./organelle_segmenter_plugin/_tests/widgets/collapsible_box_test.py
./organelle_segmenter_plugin/_tests/widgets/file_input_test.py
./organelle_segmenter_plugin/_tests/widgets/warning_message_test.py
./organelle_segmenter_plugin/_tests/widgets/workflow_step_widget_test.py
./organelle_segmenter_plugin/_tests/widgets/workflow_thumbnails_test.py
./organelle_segmenter_plugin/controller/__init__.py
./organelle_segmenter_plugin/controller/_interfaces.py
./organelle_segmenter_plugin/controller/batch_processing_controller.py
./organelle_segmenter_plugin/controller/workflow_select_controller.py
./organelle_segmenter_plugin/controller/workflow_steps_controller.py
./organelle_segmenter_plugin/core/__init__.py
./organelle_segmenter_plugin/core/_interfaces.py
./organelle_segmenter_plugin/core/application.py
./organelle_segmenter_plugin/core/controller.py
./organelle_segmenter_plugin/core/layer_reader.py
./organelle_segmenter_plugin/core/router.py
./organelle_segmenter_plugin/core/state.py
./organelle_segmenter_plugin/core/view.py
./organelle_segmenter_plugin/core/view_manager.py
./organelle_segmenter_plugin/core/viewer_abstraction.py
./organelle_segmenter_plugin/model/__init__.py
./organelle_segmenter_plugin/model/channel.py
./organelle_segmenter_plugin/model/segmenter_model.py
./organelle_segmenter_plugin/styles/main.qss
./organelle_segmenter_plugin/util/__init__.py
./organelle_segmenter_plugin/util/convert.py
./organelle_segmenter_plugin/util/debug_utils.py
./organelle_segmenter_plugin/util/directories.py
./organelle_segmenter_plugin/util/lazy.py
./organelle_segmenter_plugin/util/ui_utils.py
./organelle_segmenter_plugin/view/__init__.py
./organelle_segmenter_plugin/view/_main_template.py
./organelle_segmenter_plugin/view/batch_processing_view.py
./organelle_segmenter_plugin/view/workflow_select_view.py
./organelle_segmenter_plugin/view/workflow_steps_view.py
./organelle_segmenter_plugin/widgets/__init__.py
./organelle_segmenter_plugin/widgets/batch_complete_dialog.py
./organelle_segmenter_plugin/widgets/collapsible_box.py
./organelle_segmenter_plugin/widgets/file_input.py
./organelle_segmenter_plugin/widgets/float_slider.py
./organelle_segmenter_plugin/widgets/form.py
./organelle_segmenter_plugin/widgets/param_sweep_widget.py
./organelle_segmenter_plugin/widgets/warning_message.py
./organelle_segmenter_plugin/widgets/workflow_buttons.py
./organelle_segmenter_plugin/widgets/workflow_step_widget.py
.github/PULL_REQUEST_TEMPLATE.md
.github/workflows/publish.yml
.napari-hub/config.yml
depricated/_setup.py
depricated/plugin_preview.yml
depricated/publish.yml
depricated/pyproject.toml
depricated/setup.cfg
depricated/setup.py
docs/index.md
docs/organelle_segmenter_plugin.md
organelle_segmenter_plugin/__init__.py
organelle_segmenter_plugin/_dock_widget.py
organelle_segmenter_plugin/_reader.py
organelle_segmenter_plugin/_style.py
organelle_segmenter_plugin/napari.yaml
organelle_segmenter_plugin.egg-info/PKG-INFO
organelle_segmenter_plugin.egg-info/SOURCES.txt
organelle_segmenter_plugin.egg-info/dependency_links.txt
organelle_segmenter_plugin.egg-info/entry_points.txt
organelle_segmenter_plugin.egg-info/requires.txt
organelle_segmenter_plugin.egg-info/top_level.txt
organelle_segmenter_plugin/_tests/__init__.py
organelle_segmenter_plugin/_tests/conftest.py
organelle_segmenter_plugin/_tests/mocks.py
organelle_segmenter_plugin/_tests/style_test.py
organelle_segmenter_plugin/_tests/controller/__init__.py
organelle_segmenter_plugin/_tests/controller/batch_processing_controller_test.py
organelle_segmenter_plugin/_tests/controller/workflow_select_controller_test.py
organelle_segmenter_plugin/_tests/controller/workflow_steps_controller_test.py
organelle_segmenter_plugin/_tests/core/__init__.py
organelle_segmenter_plugin/_tests/core/application_test.py
organelle_segmenter_plugin/_tests/core/controller_test.py
organelle_segmenter_plugin/_tests/core/layer_reader_test.py
organelle_segmenter_plugin/_tests/core/router_test.py
organelle_segmenter_plugin/_tests/core/state_test.py
organelle_segmenter_plugin/_tests/core/view_manager_test.py
organelle_segmenter_plugin/_tests/core/view_test.py
organelle_segmenter_plugin/_tests/core/viewer_abstraction_test.py
organelle_segmenter_plugin/_tests/model/__init__.py
organelle_segmenter_plugin/_tests/model/segmenter_model_test.py
organelle_segmenter_plugin/_tests/util/__init__.py
organelle_segmenter_plugin/_tests/util/convert_test.py
organelle_segmenter_plugin/_tests/util/lazy_test.py
organelle_segmenter_plugin/_tests/view/__init__.py
organelle_segmenter_plugin/_tests/view/_main_template_test.py
organelle_segmenter_plugin/_tests/view/batch_processing_view_test.py
organelle_segmenter_plugin/_tests/view/workflow_select_view_test.py
organelle_segmenter_plugin/_tests/view/workflow_steps_view_test.py
organelle_segmenter_plugin/_tests/widgets/__init__.py
organelle_segmenter_plugin/_tests/widgets/collapsible_box_test.py
organelle_segmenter_plugin/_tests/widgets/file_input_test.py
organelle_segmenter_plugin/_tests/widgets/warning_message_test.py
organelle_segmenter_plugin/_tests/widgets/workflow_step_widget_test.py
organelle_segmenter_plugin/_tests/widgets/workflow_thumbnails_test.py
organelle_segmenter_plugin/assets/icons/expand_less_black_24dp.svg
organelle_segmenter_plugin/assets/icons/expand_more_black_24dp.svg
organelle_segmenter_plugin/assets/icons/gear.svg
organelle_segmenter_plugin/assets/icons/icon-parameter-sweep.svg
organelle_segmenter_plugin/assets/icons/warning.png
organelle_segmenter_plugin/controller/__init__.py
organelle_segmenter_plugin/controller/_interfaces.py
organelle_segmenter_plugin/controller/batch_processing_controller.py
organelle_segmenter_plugin/controller/workflow_select_controller.py
organelle_segmenter_plugin/controller/workflow_steps_controller.py
organelle_segmenter_plugin/core/__init__.py
organelle_segmenter_plugin/core/_interfaces.py
organelle_segmenter_plugin/core/application.py
organelle_segmenter_plugin/core/controller.py
organelle_segmenter_plugin/core/layer_reader.py
organelle_segmenter_plugin/core/router.py
organelle_segmenter_plugin/core/state.py
organelle_segmenter_plugin/core/view.py
organelle_segmenter_plugin/core/view_manager.py
organelle_segmenter_plugin/core/viewer_abstraction.py
organelle_segmenter_plugin/model/__init__.py
organelle_segmenter_plugin/model/channel.py
organelle_segmenter_plugin/model/segmenter_model.py
organelle_segmenter_plugin/styles/main.qss
organelle_segmenter_plugin/util/__init__.py
organelle_segmenter_plugin/util/convert.py
organelle_segmenter_plugin/util/debug_utils.py
organelle_segmenter_plugin/util/directories.py
organelle_segmenter_plugin/util/lazy.py
organelle_segmenter_plugin/util/ui_utils.py
organelle_segmenter_plugin/view/__init__.py
organelle_segmenter_plugin/view/_main_template.py
organelle_segmenter_plugin/view/batch_processing_view.py
organelle_segmenter_plugin/view/workflow_select_view.py
organelle_segmenter_plugin/view/workflow_steps_view.py
organelle_segmenter_plugin/widgets/__init__.py
organelle_segmenter_plugin/widgets/batch_complete_dialog.py
organelle_segmenter_plugin/widgets/collapsible_box.py
organelle_segmenter_plugin/widgets/file_input.py
organelle_segmenter_plugin/widgets/float_slider.py
organelle_segmenter_plugin/widgets/form.py
organelle_segmenter_plugin/widgets/param_sweep_widget.py
organelle_segmenter_plugin/widgets/warning_message.py
organelle_segmenter_plugin/widgets/workflow_buttons.py
organelle_segmenter_plugin/widgets/workflow_step_widget.py