LICENSE
README.md
pyproject.toml
setup.cfg
src/ORForise/Aggregate_Compare.py
src/ORForise/Annotation_Compare.py
src/ORForise/Comparator.py
src/ORForise/GFF_Adder.py
src/ORForise/GFF_Intersector.py
src/ORForise/StORForise.py
src/ORForise/__init__.py
src/ORForise/utils.py
src/ORForise.egg-info/PKG-INFO
src/ORForise.egg-info/SOURCES.txt
src/ORForise.egg-info/dependency_links.txt
src/ORForise.egg-info/entry_points.txt
src/ORForise.egg-info/requires.txt
src/ORForise.egg-info/top_level.txt
src/ORForise/ORForise_Analysis/__init__.py
src/ORForise/ORForise_Analysis/cds_checker.py
src/ORForise/ORForise_Analysis/gene_Lenghts.py
src/ORForise/ORForise_Analysis/genome_Metrics.py
src/ORForise/ORForise_Analysis/hypothetical_gene_predictions.py
src/ORForise/ORForise_Analysis/missed_Gene_Metrics.py
src/ORForise/ORForise_Analysis/parital_Match_Analysis.py
src/ORForise/ORForise_Analysis/result_File_Analysis.py
src/ORForise/ORForise_Analysis/start_Codon_Substitution.py
src/ORForise/Tools/__init__.py
src/ORForise/Tools/Augustus/Augustus.py
src/ORForise/Tools/Augustus/__init__.py
src/ORForise/Tools/Balrog/Balrog.py
src/ORForise/Tools/Balrog/__init__.py
src/ORForise/Tools/EasyGene/EasyGene.py
src/ORForise/Tools/EasyGene/__init__.py
src/ORForise/Tools/FGENESB/FGENESB.py
src/ORForise/Tools/FGENESB/__init__.py
src/ORForise/Tools/FragGeneScan/FragGeneScan.py
src/ORForise/Tools/FragGeneScan/__init__.py
src/ORForise/Tools/GFF/GFF.py
src/ORForise/Tools/GFF/__init__.py
src/ORForise/Tools/GLIMMER_3/GLIMMER_3.py
src/ORForise/Tools/GLIMMER_3/__init__.py
src/ORForise/Tools/GeneMark/GeneMark.py
src/ORForise/Tools/GeneMark/__init__.py
src/ORForise/Tools/GeneMark_HA/GeneMark_HA.py
src/ORForise/Tools/GeneMark_HA/__init__.py
src/ORForise/Tools/GeneMark_HMM/GeneMark_HMM.py
src/ORForise/Tools/GeneMark_HMM/__init__.py
src/ORForise/Tools/GeneMark_S/GeneMark_S.py
src/ORForise/Tools/GeneMark_S/__init__.py
src/ORForise/Tools/GeneMark_S_2/GeneMark_S_2.py
src/ORForise/Tools/GeneMark_S_2/__init__.py
src/ORForise/Tools/MetaGene/MetaGene.py
src/ORForise/Tools/MetaGene/__init__.py
src/ORForise/Tools/MetaGeneAnnotator/MetaGeneAnnotator.py
src/ORForise/Tools/MetaGeneAnnotator/__init__.py
src/ORForise/Tools/MetaGeneMark/MetaGeneMark.py
src/ORForise/Tools/MetaGeneMark/__init__.py
src/ORForise/Tools/Prodigal/Prodigal.py
src/ORForise/Tools/Prodigal/__init__.py
src/ORForise/Tools/StORF_Reporter/StORF_Reporter.py
src/ORForise/Tools/StORF_Reporter/__init__.py
src/ORForise/Tools/StORF_Undetected/StORF_Undetected.py
src/ORForise/Tools/StORF_Undetected/__init__.py
src/ORForise/Tools/StORF_Undetected/Completely_Undetected/Completey_Undetected.py
src/ORForise/Tools/StORF_Undetected/Completely_Undetected/__init__.py
src/ORForise/Tools/StORF_Undetected/unvitiated_Genes/__init__.py
src/ORForise/Tools/StORF_Undetected/unvitiated_Genes/unvitiated_Missed_Genes.py
src/ORForise/Tools/TransDecoder/TransDecoder.py
src/ORForise/Tools/TransDecoder/__init__.py