Metadata-Version: 2.1
Name: orcomics
Version: 0.1.1
Summary: Ollivier-Ricci curvature for -omic network analysis
Author-email: Anish Simhal <aksimhal@gmail.com>
Project-URL: Homepage, https://github.com/aksimhal/ORC-Omics
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
Classifier: Operating System :: OS Independent
Requires-Python: >=3.8
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: scipy
Requires-Dist: numpy
Requires-Dist: networkx
Requires-Dist: pot
Requires-Dist: pandas
Requires-Dist: ecos
Requires-Dist: cvxpy

# ORC-Omics 

Welcome to ORCO: Ollivier-Ricci curvature for omic data analysis. Details about the tool and implementation are found at [insert biorxiv link]. 

## How to install 
ORCO can be installe via pip: ```pip install orco``` 

## Examples (jupyter notebook)
* Example 1: This illustrates ORCO on nodal values using a toy 6-node network 
* Example 2: This illustrates ORCO on a 90 node network incoporating edges from the Human Protein Reference Database and RNA-seq data from the MMRF CoMMpass dataset.

## Issues 
For any issues, please feel free to contact Anish (aksimhal [at] gmail) or open an issue. 
