.coveragerc
.gitignore
.pre-commit-config.yaml
CHANGELOG.md
CODE_OF_CONDUCT.md
LICENSE
README.md
README.pypi
codecov.yml
pyproject.toml
readthedocs.yml
setup.cfg
setup.py
tox.ini
.github/FUNDING.yml
.github/PULL_REQUEST_TEMPLATE.md
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/workflows/lint.yml
.github/workflows/release.yml
.github/workflows/test.yml
Orange3_Bioinformatics.egg-info/PKG-INFO
Orange3_Bioinformatics.egg-info/SOURCES.txt
Orange3_Bioinformatics.egg-info/dependency_links.txt
Orange3_Bioinformatics.egg-info/entry_points.txt
Orange3_Bioinformatics.egg-info/namespace_packages.txt
Orange3_Bioinformatics.egg-info/not-zip-safe
Orange3_Bioinformatics.egg-info/requires.txt
Orange3_Bioinformatics.egg-info/top_level.txt
doc/Makefile
doc/conf.py
doc/contents.rst
doc/index.rst
doc/make.bat
doc/scripting_reference.rst
doc/widgets.json
doc/widgets.rst
doc/_static/bioinformatics-sidebar-logo.svg
doc/_templates/about.html
doc/_templates/globaltoc.html
doc/_templates/useful_links.html
doc/scripting_references/annotation.rst
doc/scripting_references/dicty_phenotypes.rst
doc/scripting_references/geneset.rst
doc/scripting_references/geo.rst
doc/scripting_references/go.rst
doc/scripting_references/kegg.rst
doc/scripting_references/marker_genes.rst
doc/scripting_references/ncbi_gene.rst
doc/scripting_references/ncbi_taxonomy.rst
doc/scripting_references/resolwe.rst
doc/scripting_references/serverfiles.rst
doc/scripting_references/code/geo/dataset_info.py
doc/scripting_references/code/geo/dataset_samples.py
doc/scripting_references/code/geo/predict_disease_state.py
doc/scripting_references/code/go/enrichment.py
doc/scripting_references/code/go/gene_annotations.py
doc/widgets/annotate_projection.md
doc/widgets/cluster_analysis.md
doc/widgets/databases_update.md
doc/widgets/dicty_express.md
doc/widgets/differential_expression.md
doc/widgets/gene_set_enrichment.md
doc/widgets/genes.md
doc/widgets/geo_data_sets.md
doc/widgets/go_browser.md
doc/widgets/kegg_pathways.md
doc/widgets/marker_genes.md
doc/widgets/volcano_plot.md
doc/widgets/icons/annotator.png
doc/widgets/icons/cluster-analysis.png
doc/widgets/icons/databases-update.png
doc/widgets/icons/dicty-express.png
doc/widgets/icons/differential-expression.png
doc/widgets/icons/gene-set-enrichment.png
doc/widgets/icons/genes.png
doc/widgets/icons/geo-data-sets.png
doc/widgets/icons/go-browser.png
doc/widgets/icons/kegg-pathways.png
doc/widgets/icons/volcano-plot.png
doc/widgets/images/annotate_projection/annotator-example.png
doc/widgets/images/annotate_projection/annotator-example2.png
doc/widgets/images/annotate_projection/annotator-stamped.png
doc/widgets/images/cluster_analysis/Cluster-Analysis-stamped.png
doc/widgets/images/database_update/Add-Dataset.png
doc/widgets/images/database_update/Databases-Update-stamped.png
doc/widgets/images/dicty_express/dictyExpress-Example.png
doc/widgets/images/dicty_express/dictyExpress-stamped.png
doc/widgets/images/differential_expression/Differential-Expression-Example.png
doc/widgets/images/differential_expression/Differential-Expression-stamped.png
doc/widgets/images/gene_set_enrichment/Gene-Set-Enrichment-stamped.png
doc/widgets/images/genes/genes-Example.png
doc/widgets/images/genes/genes-stamped.png
doc/widgets/images/geo_data_sets/GEO-Data-Sets-Example.png
doc/widgets/images/geo_data_sets/GEO-Data-Sets-stamped.png
doc/widgets/images/go_browser/Filter-Select.png
doc/widgets/images/go_browser/GO-Browser-Example.png
doc/widgets/images/go_browser/GO-Browser-stamped.png
doc/widgets/images/kegg_pathways/KEGG-Pathways-Example.png
doc/widgets/images/kegg_pathways/KEGG-Pathways-stamped.png
orangecontrib/__init__.py
orangecontrib/bioinformatics/__init__.py
orangecontrib/bioinformatics/annotation/__init__.py
orangecontrib/bioinformatics/annotation/annotate_projection.py
orangecontrib/bioinformatics/annotation/annotate_samples.py
orangecontrib/bioinformatics/cluster_analysis/__init__.py
orangecontrib/bioinformatics/dicty/__init__.py
orangecontrib/bioinformatics/dicty/phenotypes.py
orangecontrib/bioinformatics/geneset/__init__.py
orangecontrib/bioinformatics/geneset/utils.py
orangecontrib/bioinformatics/geo/__init__.py
orangecontrib/bioinformatics/geo/dataset.py
orangecontrib/bioinformatics/go/__init__.py
orangecontrib/bioinformatics/go/config.py
orangecontrib/bioinformatics/kegg/__init__.py
orangecontrib/bioinformatics/kegg/api.py
orangecontrib/bioinformatics/kegg/brite.py
orangecontrib/bioinformatics/kegg/caching.py
orangecontrib/bioinformatics/kegg/conf.py
orangecontrib/bioinformatics/kegg/databases.py
orangecontrib/bioinformatics/kegg/pathway.py
orangecontrib/bioinformatics/kegg/service.py
orangecontrib/bioinformatics/kegg/types.py
orangecontrib/bioinformatics/kegg/entry/__init__.py
orangecontrib/bioinformatics/kegg/entry/fields.py
orangecontrib/bioinformatics/kegg/entry/parser.py
orangecontrib/bioinformatics/ncbi/__init__.py
orangecontrib/bioinformatics/ncbi/gene/__init__.py
orangecontrib/bioinformatics/ncbi/gene/config.py
orangecontrib/bioinformatics/ncbi/homologene/__init__.py
orangecontrib/bioinformatics/ncbi/taxonomy/__init__.py
orangecontrib/bioinformatics/ncbi/taxonomy/utils.py
orangecontrib/bioinformatics/preprocess/__init__.py
orangecontrib/bioinformatics/preprocess/normalize.py
orangecontrib/bioinformatics/resolwe/__init__.py
orangecontrib/bioinformatics/resolwe/genapi.py
orangecontrib/bioinformatics/resolwe/resapi.py
orangecontrib/bioinformatics/resolwe/sample_metadata.py
orangecontrib/bioinformatics/resolwe/utils.py
orangecontrib/bioinformatics/tests/__init__.py
orangecontrib/bioinformatics/tests/test_geneset.py
orangecontrib/bioinformatics/tests/test_geo.py
orangecontrib/bioinformatics/tests/test_statistics.py
orangecontrib/bioinformatics/tests/annotation/__init__.py
orangecontrib/bioinformatics/tests/annotation/test_annotate_projection.py
orangecontrib/bioinformatics/tests/annotation/test_annotate_samples.py
orangecontrib/bioinformatics/tests/kegg/__init__.py
orangecontrib/bioinformatics/tests/kegg/test_api.py
orangecontrib/bioinformatics/tests/kegg/test_databases.py
orangecontrib/bioinformatics/tests/kegg/test_entry.py
orangecontrib/bioinformatics/tests/ncbi/__init__.py
orangecontrib/bioinformatics/tests/ncbi/test_gene.py
orangecontrib/bioinformatics/tests/ncbi/test_homologene.py
orangecontrib/bioinformatics/tests/ncbi/test_taxonomy.py
orangecontrib/bioinformatics/tests/preprocess/__init__.py
orangecontrib/bioinformatics/tests/preprocess/test_normalize.py
orangecontrib/bioinformatics/tests/resolwe/__init__.py
orangecontrib/bioinformatics/tests/resolwe/test_genapi.py
orangecontrib/bioinformatics/tests/resolwe/test_sample_metadata.py
orangecontrib/bioinformatics/tests/utils/__init__.py
orangecontrib/bioinformatics/tests/utils/test_gui.py
orangecontrib/bioinformatics/tests/widgets/__init__.py
orangecontrib/bioinformatics/tests/widgets/test_OWAnnotateProjection.py
orangecontrib/bioinformatics/tests/widgets/test_OWDifferentialExpression.py
orangecontrib/bioinformatics/tests/widgets/test_OWGEODatasets.py
orangecontrib/bioinformatics/tests/widgets/test_OWGeneSets.py
orangecontrib/bioinformatics/tests/widgets/test_OWGenes.py
orangecontrib/bioinformatics/tests/widgets/test_OWGenialisExpressions.py
orangecontrib/bioinformatics/tests/widgets/test_OWHomologs.py
orangecontrib/bioinformatics/tests/widgets/test_OWMarkerGenes.py
orangecontrib/bioinformatics/tests/widgets/components/__init__.py
orangecontrib/bioinformatics/tests/widgets/components/test_GeneSetSelection.py
orangecontrib/bioinformatics/tests/widgets/data/genes.tab
orangecontrib/bioinformatics/tests/widgets/data/markers-panglao.pkl
orangecontrib/bioinformatics/utils/__init__.py
orangecontrib/bioinformatics/utils/serverfiles.py
orangecontrib/bioinformatics/utils/statistics.py
orangecontrib/bioinformatics/widgets/OWAnnotateProjection.py
orangecontrib/bioinformatics/widgets/OWClusterAnalysis.py
orangecontrib/bioinformatics/widgets/OWDatabasesUpdate.py
orangecontrib/bioinformatics/widgets/OWDifferentialExpression.py
orangecontrib/bioinformatics/widgets/OWGEODatasets.py
orangecontrib/bioinformatics/widgets/OWGOBrowser.py
orangecontrib/bioinformatics/widgets/OWGeneSetEnrichment.py
orangecontrib/bioinformatics/widgets/OWGeneSets.py
orangecontrib/bioinformatics/widgets/OWGenes.py
orangecontrib/bioinformatics/widgets/OWGenialisExpressions.py
orangecontrib/bioinformatics/widgets/OWHomologs.py
orangecontrib/bioinformatics/widgets/OWKEGGPathwayBrowser.py
orangecontrib/bioinformatics/widgets/OWMarkerGenes.py
orangecontrib/bioinformatics/widgets/OWVolcanoPlot.py
orangecontrib/bioinformatics/widgets/OWdictyExpress.py
orangecontrib/bioinformatics/widgets/__init__.py
orangecontrib/bioinformatics/widgets/components/__init__.py
orangecontrib/bioinformatics/widgets/components/gene_set_selection.py
orangecontrib/bioinformatics/widgets/icons/Category-Bioinformatics.svg
orangecontrib/bioinformatics/widgets/icons/OWAnnotateProjection.svg
orangecontrib/bioinformatics/widgets/icons/OWClusterAnalysis.svg
orangecontrib/bioinformatics/widgets/icons/OWDatabasesUpdate.svg
orangecontrib/bioinformatics/widgets/icons/OWDifferentialExpression.svg
orangecontrib/bioinformatics/widgets/icons/OWGEODatasets.svg
orangecontrib/bioinformatics/widgets/icons/OWGOBrowser.svg
orangecontrib/bioinformatics/widgets/icons/OWGeneInfo.svg
orangecontrib/bioinformatics/widgets/icons/OWGeneSetEnrichment.svg
orangecontrib/bioinformatics/widgets/icons/OWGeneSets.svg
orangecontrib/bioinformatics/widgets/icons/OWGenialisExpressions.svg
orangecontrib/bioinformatics/widgets/icons/OWHomologs.svg
orangecontrib/bioinformatics/widgets/icons/OWKEGGPathwayBrowser.svg
orangecontrib/bioinformatics/widgets/icons/OWMarkerGenes.svg
orangecontrib/bioinformatics/widgets/icons/OWVolcanoPlot.svg
orangecontrib/bioinformatics/widgets/icons/OWdictyExpress.png
orangecontrib/bioinformatics/widgets/icons/OWdictyExpress.svg
orangecontrib/bioinformatics/widgets/utils/__init__.py
orangecontrib/bioinformatics/widgets/utils/concurrent.py
orangecontrib/bioinformatics/widgets/utils/data.py
orangecontrib/bioinformatics/widgets/utils/settings.py
orangecontrib/bioinformatics/widgets/utils/gui/__init__.py
orangecontrib/bioinformatics/widgets/utils/gui/gene_scoring.py
orangecontrib/bioinformatics/widgets/utils/gui/gene_sets.py
orangecontrib/bioinformatics/widgets/utils/gui/label_selection.py
orangecontrib/bioinformatics/widgets/utils/gui/list_completer.py