COPYING
LICENSE
MANIFEST.in
README.rst
_bioinformatics.py
distribute_setup.py
setup.py
Orange_Bioinformatics.egg-info/PKG-INFO
Orange_Bioinformatics.egg-info/SOURCES.txt
Orange_Bioinformatics.egg-info/dependency_links.txt
Orange_Bioinformatics.egg-info/entry_points.txt
Orange_Bioinformatics.egg-info/namespace_packages.txt
Orange_Bioinformatics.egg-info/not-zip-safe
Orange_Bioinformatics.egg-info/requires.txt
Orange_Bioinformatics.egg-info/top_level.txt
docs/Makefile
docs/rst/PIPA.rst
docs/rst/conf.py
docs/rst/databases.rst
docs/rst/geodatasets.rst
docs/rst/index.rst
docs/rst/images/PIPA.png
docs/rst/images/PIPA_datatable.png
docs/rst/images/PIPA_distance.png
docs/rst/images/PIPA_schema.png
docs/rst/images/databases-hover.png
docs/rst/images/databases-stamped.png
docs/rst/images/databases-tags.txt
docs/rst/images/databases.png
docs/rst/images/geodatasets-stamped.png
docs/rst/images/geodatasets-tags.txt
docs/rst/images/geodatasets.png
docs/rst/reference/arrayexpress.rst
docs/rst/reference/biomart.rst
docs/rst/reference/dicty.rst
docs/rst/reference/dictybase.rst
docs/rst/reference/gene.homology.rst
docs/rst/reference/gene.rst
docs/rst/reference/genesets.rst
docs/rst/reference/geo.rst
docs/rst/reference/go.rst
docs/rst/reference/gsea.rst
docs/rst/reference/kegg.rst
docs/rst/reference/omim.rst
docs/rst/reference/ontology.rst
docs/rst/reference/ppi.rst
docs/rst/reference/taxonomy.rst
docs/rst/reference/utils.stats.rst
docs/rst/reference/code/disease.net
docs/rst/reference/code/genematch1.py
docs/rst/reference/code/genematch2.py
docs/rst/reference/code/genematch_path.py
docs/rst/reference/code/geo_gds1.py
docs/rst/reference/code/geo_gds2.py
docs/rst/reference/code/geo_gds3.py
docs/rst/reference/code/geo_gds4.py
docs/rst/reference/code/geo_gds5.py
docs/rst/reference/code/geo_gds6.py
docs/rst/reference/code/go_enrichment.py
docs/rst/reference/code/go_gene_annotations.py
docs/rst/reference/code/gsea1.py
docs/rst/reference/code/gsea2.py
docs/rst/reference/code/gsea_genes.py
docs/rst/reference/code/gsea_instances.py
docs/rst/reference/code/homology-yeast-to-human.py
docs/rst/reference/code/omim_disease_network.py
docs/rst/reference/code/pipax1.py
docs/rst/reference/code/taxonomy1.py
docs/rst/sphinx/bio/theme.conf
docs/rst/sphinx/bio/static/orange-bio.css
docs/rst/sphinx/bio/static/images/1.png
docs/rst/sphinx/bio/static/images/10.png
docs/rst/sphinx/bio/static/images/2.png
docs/rst/sphinx/bio/static/images/3.png
docs/rst/sphinx/bio/static/images/4.png
docs/rst/sphinx/bio/static/images/5.png
docs/rst/sphinx/bio/static/images/6.png
docs/rst/sphinx/bio/static/images/7.png
docs/rst/sphinx/bio/static/images/8.png
docs/rst/sphinx/bio/static/images/9.png
orangecontrib/__init__.py
orangecontrib/bio/__init__.py
orangecontrib/bio/arrayexpress.py
orangecontrib/bio/biomart.py
orangecontrib/bio/chem.py
orangecontrib/bio/geo.py
orangecontrib/bio/go.py
orangecontrib/bio/gsea.py
orangecontrib/bio/mesh.py
orangecontrib/bio/obiArrayExpress.py
orangecontrib/bio/obiBioMart.py
orangecontrib/bio/obiChem.py
orangecontrib/bio/obiDicty.py
orangecontrib/bio/obiDictyMutants.py
orangecontrib/bio/obiExperiments.py
orangecontrib/bio/obiExpression.py
orangecontrib/bio/obiGEO.py
orangecontrib/bio/obiGO.py
orangecontrib/bio/obiGene.py
orangecontrib/bio/obiGeneAtlas.py
orangecontrib/bio/obiGeneAtlasSets.py
orangecontrib/bio/obiGeneMania.py
orangecontrib/bio/obiGeneSetSig.py
orangecontrib/bio/obiGeneSets.py
orangecontrib/bio/obiGsea.py
orangecontrib/bio/obiHomoloGene.py
orangecontrib/bio/obiKEGG.py
orangecontrib/bio/obiMeSH.py
orangecontrib/bio/obiOMIM.py
orangecontrib/bio/obiOntology.py
orangecontrib/bio/obiPPI.py
orangecontrib/bio/obiProb.py
orangecontrib/bio/obiTaxonomy.py
orangecontrib/bio/obimiRNA.py
orangecontrib/bio/omim.py
orangecontrib/bio/ontology.py
orangecontrib/bio/ppi.py
orangecontrib/bio/taxonomy.py
orangecontrib/bio/dicty/__init__.py
orangecontrib/bio/dicty/phenotypes.py
orangecontrib/bio/gene/__init__.py
orangecontrib/bio/gene/homology.py
orangecontrib/bio/geneset/__init__.py
orangecontrib/bio/geneset/transform.py
orangecontrib/bio/kegg/__init__.py
orangecontrib/bio/kegg/api.py
orangecontrib/bio/kegg/brite.py
orangecontrib/bio/kegg/caching.py
orangecontrib/bio/kegg/conf.py
orangecontrib/bio/kegg/databases.py
orangecontrib/bio/kegg/pathway.py
orangecontrib/bio/kegg/service.py
orangecontrib/bio/kegg/types.py
orangecontrib/bio/kegg/entry/__init__.py
orangecontrib/bio/kegg/entry/fields.py
orangecontrib/bio/kegg/entry/parser.py
orangecontrib/bio/utils/__init__.py
orangecontrib/bio/utils/expression.py
orangecontrib/bio/utils/group.py
orangecontrib/bio/utils/stats.py
orangecontrib/bio/widgets/Anova.py
orangecontrib/bio/widgets/OWBioMart.py
orangecontrib/bio/widgets/OWCustomSets.py
orangecontrib/bio/widgets/OWDicty.py
orangecontrib/bio/widgets/OWDisplayProfiles.py
orangecontrib/bio/widgets/OWFeatureSelection.py
orangecontrib/bio/widgets/OWGEODatasets.py
orangecontrib/bio/widgets/OWGOEnrichmentAnalysis.py
orangecontrib/bio/widgets/OWGenCloud.py
orangecontrib/bio/widgets/OWGeneAtlasTissueExpression.py
orangecontrib/bio/widgets/OWGeneInfo.py
orangecontrib/bio/widgets/OWGeneNetwork.py
orangecontrib/bio/widgets/OWGenotypeDistances.py
orangecontrib/bio/widgets/OWGsea.py
orangecontrib/bio/widgets/OWHeatMap.py
orangecontrib/bio/widgets/OWKEGGPathwayBrowser.py
orangecontrib/bio/widgets/OWMAPlot.py
orangecontrib/bio/widgets/OWMeSHBrowser.py
orangecontrib/bio/widgets/OWMoleculeVisualizer.py
orangecontrib/bio/widgets/OWPIPAx.py
orangecontrib/bio/widgets/OWQualityControl.py
orangecontrib/bio/widgets/OWSelectGenes.py
orangecontrib/bio/widgets/OWSetEnrichment.py
orangecontrib/bio/widgets/OWSetEnrichment2.py
orangecontrib/bio/widgets/OWUpdateGenomicsDatabases.py
orangecontrib/bio/widgets/OWVennDiagram.py
orangecontrib/bio/widgets/OWVulcanoPlot.py
orangecontrib/bio/widgets/__init__.py
orangecontrib/bio/widgets/chipappx.py
orangecontrib/bio/widgets/chipimpute.py
orangecontrib/bio/widgets/chipstat.py
orangecontrib/bio/widgets/numpyExtn.py
orangecontrib/bio/widgets/icons/ApproximateProfiles.png
orangecontrib/bio/widgets/icons/BioMart.png
orangecontrib/bio/widgets/icons/BioMart.svg
orangecontrib/bio/widgets/icons/Category-Bioinformatics.svg
orangecontrib/bio/widgets/icons/Databases.svg
orangecontrib/bio/widgets/icons/DictyExpress.svg
orangecontrib/bio/widgets/icons/ExpressionProfiles.png
orangecontrib/bio/widgets/icons/ExpressionProfiles.svg
orangecontrib/bio/widgets/icons/FeatureSelection.png
orangecontrib/bio/widgets/icons/GEODataSets.png
orangecontrib/bio/widgets/icons/GEODataSets.svg
orangecontrib/bio/widgets/icons/GOBrowser.svg
orangecontrib/bio/widgets/icons/GOTermFinder.png
orangecontrib/bio/widgets/icons/GSEA.png
orangecontrib/bio/widgets/icons/GSEA.svg
orangecontrib/bio/widgets/icons/GenCloud.svg
orangecontrib/bio/widgets/icons/GeneExpressionAtlas.svg
orangecontrib/bio/widgets/icons/GeneInfo.png
orangecontrib/bio/widgets/icons/GeneInfo.svg
orangecontrib/bio/widgets/icons/GeneMANIA.png
orangecontrib/bio/widgets/icons/GeneNetwork.svg
orangecontrib/bio/widgets/icons/GeneSelection.svg
orangecontrib/bio/widgets/icons/GeneSetEnrichment.svg
orangecontrib/bio/widgets/icons/GenotypeDistances.png
orangecontrib/bio/widgets/icons/GenotypeDistances.svg
orangecontrib/bio/widgets/icons/HeatMap.png
orangecontrib/bio/widgets/icons/Heatmap.svg
orangecontrib/bio/widgets/icons/KEGG.png
orangecontrib/bio/widgets/icons/KEGGPathways.svg
orangecontrib/bio/widgets/icons/MAPlot.svg
orangecontrib/bio/widgets/icons/MeSH.png
orangecontrib/bio/widgets/icons/MeSHBrowser.svg
orangecontrib/bio/widgets/icons/MoleculeVisualizer.png
orangecontrib/bio/widgets/icons/MoleculeVisualizer.svg
orangecontrib/bio/widgets/icons/PIPA.png
orangecontrib/bio/widgets/icons/PIPA.svg
orangecontrib/bio/widgets/icons/QualityControl.svg
orangecontrib/bio/widgets/icons/SelectGenes.svg
orangecontrib/bio/widgets/icons/UpdateDatabases.png
orangecontrib/bio/widgets/icons/VennDiagram.svg
orangecontrib/bio/widgets/icons/VulcanoPlot.png
orangecontrib/bio/widgets/icons/VulcanoPlot.svg
orangecontrib/bio/widgets/icons/background_16.png
orangecontrib/bio/widgets/icons/background_32.png
orangecontrib/bio/widgets/icons/background_40.png
orangecontrib/bio/widgets/icons/background_48.png
orangecontrib/bio/widgets/icons/background_60.png
orangecontrib/bio/widgets/icons/customSets.svg
orangecontrib/bio/widgets/icons/dictyExpress.png
orangecontrib/bio/widgets/prototypes/OWANOVA.py
orangecontrib/bio/widgets/prototypes/OWApproxProfiles.py
orangecontrib/bio/widgets/prototypes/OWArrayExpress.py
orangecontrib/bio/widgets/prototypes/OWDataDistance.py
orangecontrib/bio/widgets/prototypes/OWDataFiles.py
orangecontrib/bio/widgets/prototypes/OWDataFilesSave.py
orangecontrib/bio/widgets/prototypes/OWDataFilesSelector.py
orangecontrib/bio/widgets/prototypes/OWDisplayMotifs.py
orangecontrib/bio/widgets/prototypes/OWEpistasisAnalysis.py
orangecontrib/bio/widgets/prototypes/OWExampleSelector.py
orangecontrib/bio/widgets/prototypes/OWHypTest.py
orangecontrib/bio/widgets/prototypes/OWImputeProfiles.py
orangecontrib/bio/widgets/prototypes/OWNormalize.py
orangecontrib/bio/widgets/prototypes/OWProcessChipData.py
orangecontrib/bio/widgets/prototypes/OWtest.py
orangecontrib/bio/widgets/prototypes/__init__.py
orangecontrib/bio/widgets/prototypes/icons/ChipANOVA.png
orangecontrib/bio/widgets/prototypes/icons/ChipDataFiles.png
orangecontrib/bio/widgets/prototypes/icons/ChipDistance.png
orangecontrib/bio/widgets/prototypes/icons/DataFilesSave.png
orangecontrib/bio/widgets/prototypes/icons/DataFilesSelector.png
orangecontrib/bio/widgets/prototypes/icons/EpistasisAnalysis.png
orangecontrib/bio/widgets/prototypes/icons/ImputeProfiles.png
orangecontrib/bio/widgets/prototypes/icons/Normalize.png
orangecontrib/bio/widgets/prototypes/icons/ProcessChipData.png
orangecontrib/bio/widgets/prototypes/icons/SelectGenes.png
orangecontrib/bio/widgets/utils/__init__.py
orangecontrib/bio/widgets/utils/download.py
scripts/download_datasets.py
scripts/geo2orange.py