LICENSE
MANIFEST.in
README.md
requirements.txt
setup.cfg
setup.py
optinist/Snakefile
optinist/__init__.py
optinist/__main__.py
optinist/__main_unit__.py
optinist/version.py
optinist.egg-info/PKG-INFO
optinist.egg-info/SOURCES.txt
optinist.egg-info/dependency_links.txt
optinist.egg-info/entry_points.txt
optinist.egg-info/not-zip-safe
optinist.egg-info/requires.txt
optinist.egg-info/top_level.txt
optinist/api/__init__.py
optinist/api/dir_path.py
optinist/api/logger.py
optinist/api/config/__init__.py
optinist/api/config/config_reader.py
optinist/api/config/config_writer.py
optinist/api/dataclass/__init__.py
optinist/api/dataclass/bar.py
optinist/api/dataclass/base.py
optinist/api/dataclass/caiman.py
optinist/api/dataclass/csv.py
optinist/api/dataclass/dataclass.py
optinist/api/dataclass/heatmap.py
optinist/api/dataclass/html.py
optinist/api/dataclass/image.py
optinist/api/dataclass/iscell.py
optinist/api/dataclass/lccd.py
optinist/api/dataclass/nwb.py
optinist/api/dataclass/scatter.py
optinist/api/dataclass/suite2p.py
optinist/api/dataclass/timeseries.py
optinist/api/dataclass/utils.py
optinist/api/edit_ROI/__init__.py
optinist/api/edit_ROI/edit_ROI.py
optinist/api/edit_ROI/utils.py
optinist/api/edit_ROI/wrappers/__init__.py
optinist/api/edit_ROI/wrappers/caiman_edit_roi/__init__.py
optinist/api/edit_ROI/wrappers/caiman_edit_roi/add_roi.py
optinist/api/edit_ROI/wrappers/caiman_edit_roi/delete_roi.py
optinist/api/edit_ROI/wrappers/caiman_edit_roi/merge_roi.py
optinist/api/edit_ROI/wrappers/caiman_edit_roi/utils.py
optinist/api/edit_ROI/wrappers/lccd_edit_roi/__init__.py
optinist/api/edit_ROI/wrappers/lccd_edit_roi/add_roi.py
optinist/api/edit_ROI/wrappers/lccd_edit_roi/delete_roi.py
optinist/api/edit_ROI/wrappers/lccd_edit_roi/merge_roi.py
optinist/api/edit_ROI/wrappers/lccd_edit_roi/utils.py
optinist/api/edit_ROI/wrappers/suite2p_edit_roi/__init__.py
optinist/api/edit_ROI/wrappers/suite2p_edit_roi/add_roi.py
optinist/api/edit_ROI/wrappers/suite2p_edit_roi/delete_roi.py
optinist/api/edit_ROI/wrappers/suite2p_edit_roi/merge_roi.py
optinist/api/edit_ROI/wrappers/suite2p_edit_roi/utils.py
optinist/api/experiment/__init__.py
optinist/api/experiment/experiment.py
optinist/api/experiment/experiment_builder.py
optinist/api/experiment/experiment_reader.py
optinist/api/experiment/experiment_writer.py
optinist/api/nwb/__init__.py
optinist/api/nwb/nwb.py
optinist/api/nwb/nwb_creater.py
optinist/api/nwb/optinist_data.py
optinist/api/pickle/__init__.py
optinist/api/pickle/pickle_reader.py
optinist/api/pickle/pickle_writer.py
optinist/api/rules/__init__.py
optinist/api/rules/const.py
optinist/api/rules/data.py
optinist/api/rules/edit_ROI.py
optinist/api/rules/file_writer.py
optinist/api/rules/func.py
optinist/api/rules/runner.py
optinist/api/snakemake/__init__.py
optinist/api/snakemake/smk.py
optinist/api/snakemake/smk_builder.py
optinist/api/snakemake/smk_utils.py
optinist/api/snakemake/snakemake_executor.py
optinist/api/snakemake/snakemake_reader.py
optinist/api/snakemake/snakemake_rule.py
optinist/api/snakemake/snakemake_writer.py
optinist/api/utils/__init__.py
optinist/api/utils/filepath_creater.py
optinist/api/utils/json_writer.py
optinist/api/workflow/__init__.py
optinist/api/workflow/workflow.py
optinist/api/workflow/workflow_params.py
optinist/api/workflow/workflow_result.py
optinist/api/workflow/workflow_runner.py
optinist/app_config/logging.yaml
optinist/conda/caiman_env.yaml
optinist/conda/lccd_env.yaml
optinist/conda/optinist_env.yaml
optinist/conda/suite2p_env.yaml
optinist/config/caiman_cnmf.yaml
optinist/config/caiman_mc.yaml
optinist/config/cca.yaml
optinist/config/cell_grouping.yaml
optinist/config/correlation.yaml
optinist/config/cross_correlation.yaml
optinist/config/dummy_image2image.yaml
optinist/config/eta.yaml
optinist/config/glm.yaml
optinist/config/granger.yaml
optinist/config/lccd_cell_detection.yaml
optinist/config/lda.yaml
optinist/config/nwb.yaml
optinist/config/pca.yaml
optinist/config/snakemake.yaml
optinist/config/suite2p.yaml
optinist/config/suite2p_file_convert.yaml
optinist/config/suite2p_registration.yaml
optinist/config/suite2p_roi.yaml
optinist/config/suite2p_spike_deconv.yaml
optinist/config/svm.yaml
optinist/config/tsne.yaml
optinist/frontend/build/asset-manifest.json
optinist/frontend/build/index.html
optinist/frontend/build/robots.txt
optinist/frontend/build/static/favicon.ico
optinist/frontend/build/static/manifest.json
optinist/frontend/build/static/css/2.dab0dc93.chunk.css
optinist/frontend/build/static/css/2.dab0dc93.chunk.css.map
optinist/frontend/build/static/css/main.08a92549.chunk.css
optinist/frontend/build/static/css/main.08a92549.chunk.css.map
optinist/frontend/build/static/js/2.d6a78225.chunk.js
optinist/frontend/build/static/js/2.d6a78225.chunk.js.LICENSE.txt
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optinist/frontend/build/static/js/runtime-main.6a23d4cb.js
optinist/frontend/build/static/js/runtime-main.6a23d4cb.js.map
optinist/frontend/build/static/media/optinist.e44efe32.png
optinist/routers/__init__.py
optinist/routers/algolist.py
optinist/routers/const.py
optinist/routers/experiment.py
optinist/routers/files.py
optinist/routers/hdf5.py
optinist/routers/model.py
optinist/routers/outputs.py
optinist/routers/params.py
optinist/routers/run.py
optinist/routers/fileIO/__init__.py
optinist/routers/fileIO/file_reader.py
optinist/wrappers/__init__.py
optinist/wrappers/optinist_exception.py
optinist/wrappers/caiman_wrapper/__init__.py
optinist/wrappers/caiman_wrapper/cnmf.py
optinist/wrappers/caiman_wrapper/motion_correction.py
optinist/wrappers/dummy_wrapper/__init__.py
optinist/wrappers/dummy_wrapper/dummy.py
optinist/wrappers/lccd_wrapper/__init__.py
optinist/wrappers/lccd_wrapper/lccd_detection.py
optinist/wrappers/lccd_wrapper/lccd_python/__init__.py
optinist/wrappers/lccd_wrapper/lccd_python/blob_detector.py
optinist/wrappers/lccd_wrapper/lccd_python/lccd.py
optinist/wrappers/lccd_wrapper/lccd_python/oval_filter.py
optinist/wrappers/lccd_wrapper/lccd_python/roi_integration.py
optinist/wrappers/lccd_wrapper/lccd_python/utils.py
optinist/wrappers/optinist_wrapper/__init__.py
optinist/wrappers/optinist_wrapper/utils.py
optinist/wrappers/optinist_wrapper/basic_neural_analysis/__init__.py
optinist/wrappers/optinist_wrapper/basic_neural_analysis/cell_grouping.py
optinist/wrappers/optinist_wrapper/basic_neural_analysis/eta.py
optinist/wrappers/optinist_wrapper/dimension_reduction/__init__.py
optinist/wrappers/optinist_wrapper/dimension_reduction/cca.py
optinist/wrappers/optinist_wrapper/dimension_reduction/pca.py
optinist/wrappers/optinist_wrapper/dimension_reduction/tsne.py
optinist/wrappers/optinist_wrapper/neural_decoding/__init__.py
optinist/wrappers/optinist_wrapper/neural_decoding/glm.py
optinist/wrappers/optinist_wrapper/neural_decoding/lda.py
optinist/wrappers/optinist_wrapper/neural_decoding/svm.py
optinist/wrappers/optinist_wrapper/neural_population_analysis/__init__.py
optinist/wrappers/optinist_wrapper/neural_population_analysis/correlation.py
optinist/wrappers/optinist_wrapper/neural_population_analysis/cross_correlation.py
optinist/wrappers/optinist_wrapper/neural_population_analysis/granger.py
optinist/wrappers/suite2p_wrapper/__init__.py
optinist/wrappers/suite2p_wrapper/file_convert.py
optinist/wrappers/suite2p_wrapper/registration.py
optinist/wrappers/suite2p_wrapper/roi.py
optinist/wrappers/suite2p_wrapper/spike_deconv.py