Metadata-Version: 2.1
Name: openomics
Version: 0.7.6
Summary: OpenOmics provides a bioinformatics API and web-app platform integrate and visualize the multiomics and clinical data.
Home-page: https://github.com/JonnyTran/OpenOmics
Author: Jonny Tran
Author-email: nhat.tran@mavs.uta.edu
License: MIT license
Platform: UNKNOWN
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: MIT License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: networkx (>=2.1)
Requires-Dist: dask
Requires-Dist: biopython
Requires-Dist: bioservices
Requires-Dist: h5py
Requires-Dist: dash
Requires-Dist: six (==1.10) ; python_version == "2.7"
Requires-Dist: lxml (==4.3.5) ; python_version == "2.7"

=========
OpenOmics
=========


.. image:: https://img.shields.io/pypi/v/OpenOmics.svg
        :target: https://pypi.python.org/pypi/OpenOmics

.. image:: https://img.shields.io/travis/JonnyTran/OpenOmics.svg
        :target: https://travis-ci.org/JonnyTran/OpenOmics

.. image:: https://codecov.io/gh/JonnyTran/OpenOmics/branch/master/graph/badge.svg
        :target: https://codecov.io/gh/JonnyTran/OpenOmics

.. image:: https://readthedocs.org/projects/openomics/badge/?version=latest
        :target: https://openomics.readthedocs.io/en/latest/?badge=latest
        :alt: Documentation Status

.. image:: https://pyup.io/repos/github/JonnyTran/OpenOmics/shield.svg
     :target: https://pyup.io/repos/github/JonnyTran/OpenOmics/
     :alt: Updates



OpenOmics provides a bioinformatics API and web-app platform integrate, analyze, and visualize the multi-omics and clinical data.


* Free software: MIT license
* Documentation: https://openomics.readthedocs.io.


Features
--------

* Provides a bioinformatics workflow to generate integrative results from multi-omics data.
* Facilitates integration of various bio-databases, multi-omics expression, genomics, and clinical data.
* Highly flexible to different data types and missing data.
* Provides researchers with means to consistently store and explore their experimental datasets.
* Enables scalable performance with parallel computing, while easily configurable to deploy on both single machine and a cluster. (Pending)
* Usable by both developers and scientists with its intuitive Python API and web-app dashboard interface.

Credits
-------

This package was created with Cookiecutter_ and the `pyOpenSci/cookiecutter-pyopensci`_ project template, based off `audreyr/cookiecutter-pypackage`_.

.. _Cookiecutter: https://github.com/audreyr/cookiecutter
.. _`pyOpenSci/cookiecutter-pyopensci`: https://github.com/pyOpenSci/cookiecutter-pyopensci
.. _`audreyr/cookiecutter-pypackage`: https://github.com/audreyr/cookiecutter-pypackage


=======
History
=======

0.8.0 (Pending)
---------------
* Replace Pandas Dataframe with Dask DataFrame for parallel processings
* Build web-app interface for importing user multiomics data files


0.7.2 (2019-09-01)
------------------

* Added compatibility for Python 2.7
* Refactored ClinicalData
* Built working documentations with Sphinx on readthedocs
* Added pytests for MultiOmicsData
* First successful build on Travis CI on Python 3.4-3.7, 2.7


0.6.0 (2019-08-31)
------------------

* First release on PyPI.


