LICENSE
MANIFEST.in
README.md
pyproject.toml
src/ONTraC/__init__.py
src/ONTraC/constants.py
src/ONTraC/data.py
src/ONTraC/log.py
src/ONTraC/version.py
src/ONTraC.egg-info/PKG-INFO
src/ONTraC.egg-info/SOURCES.txt
src/ONTraC.egg-info/dependency_links.txt
src/ONTraC.egg-info/entry_points.txt
src/ONTraC.egg-info/requires.txt
src/ONTraC.egg-info/top_level.txt
src/ONTraC/GNN/_GNN.py
src/ONTraC/GNN/__init__.py
src/ONTraC/analysis/__init__.py
src/ONTraC/analysis/cell_type.py
src/ONTraC/analysis/constants.py
src/ONTraC/analysis/data.py
src/ONTraC/analysis/niche_cluster.py
src/ONTraC/analysis/spatial.py
src/ONTraC/analysis/train_loss.py
src/ONTraC/analysis/utils.py
src/ONTraC/bin/NicheTrajectory.py
src/ONTraC/bin/ONTraC.py
src/ONTraC/bin/ONTraC_GNN.py
src/ONTraC/bin/ONTraC_GP.py
src/ONTraC/bin/ONTraC_GT.py
src/ONTraC/bin/ONTraC_NN.py
src/ONTraC/bin/ONTraC_NT.py
src/ONTraC/bin/ONTraC_analysis.py
src/ONTraC/bin/__init__.py
src/ONTraC/bin/createDataSet.py
src/ONTraC/integrate/__init__.py
src/ONTraC/integrate/general_control.py
src/ONTraC/model/__init__.py
src/ONTraC/model/_model.py
src/ONTraC/model/dmon_exp_pool.py
src/ONTraC/model/norm_dense_gcn_conv.py
src/ONTraC/niche_net/__init__.py
src/ONTraC/niche_net/_niche_net.py
src/ONTraC/niche_trajectory/__init__.py
src/ONTraC/niche_trajectory/_niche_trajectory.py
src/ONTraC/niche_trajectory/algorithm.py
src/ONTraC/optparser/_IO.py
src/ONTraC/optparser/_NN.py
src/ONTraC/optparser/_NT.py
src/ONTraC/optparser/__init__.py
src/ONTraC/optparser/_analysis.py
src/ONTraC/optparser/_train.py
src/ONTraC/optparser/command.py
src/ONTraC/preprocessing/__inti__.py
src/ONTraC/preprocessing/data.py
src/ONTraC/preprocessing/pp_control.py
src/ONTraC/run/__init__.py
src/ONTraC/run/processes.py
src/ONTraC/train/__init__.py
src/ONTraC/train/_batch_train.py
src/ONTraC/train/inspect_funcs.py
src/ONTraC/train/loss_funs.py
src/ONTraC/utils/__init__.py
src/ONTraC/utils/_utils.py
src/ONTraC/utils/decorators.py
tests/test_GNN.py
tests/test_analysis.py
tests/test_niche_net.py
tests/test_niche_trajectory.py
tests/test_optparser.py