MANIFEST.in
README.rst
setup.cfg
setup.py
bin/clear-cache.py
bin/materialize.py
bin/ogr.py
bin/ontobio-assoc.py
bin/ontobio-lexmap.py
bin/ontobio-parse-assocs.py
bin/rdfgen.py
bin/validate.py
ontobio/__init__.py
ontobio/assoc_factory.py
ontobio/assoc_schema.py
ontobio/assocmodel.py
ontobio/cgraph.py
ontobio/config.py
ontobio/config.yaml
ontobio/ecomap.py
ontobio/lexmap.py
ontobio/obograph_util.py
ontobio/ontol.py
ontobio/ontol_factory.py
ontobio/slimmer.py
ontobio/xref_util.py
ontobio.egg-info/PKG-INFO
ontobio.egg-info/SOURCES.txt
ontobio.egg-info/dependency_links.txt
ontobio.egg-info/requires.txt
ontobio.egg-info/top_level.txt
ontobio/analysis/__init__.py
ontobio/analysis/semsim.py
ontobio/golr/__init__.py
ontobio/golr/beacon_query.py
ontobio/golr/golr_associations.py
ontobio/golr/golr_entities.py
ontobio/golr/golr_matrix.py
ontobio/golr/golr_query.py
ontobio/golr/golr_sim.py
ontobio/golr/golr_stats.py
ontobio/io/__init__.py
ontobio/io/assocparser.py
ontobio/io/assocwriter.py
ontobio/io/entityparser.py
ontobio/io/entitywriter.py
ontobio/io/gaference.py
ontobio/io/gafgpibridge.py
ontobio/io/gafparser.py
ontobio/io/gpadparser.py
ontobio/io/hpoaparser.py
ontobio/io/ontol_renderers.py
ontobio/io/parsereport.py
ontobio/io/qc.py
ontobio/model/GolrResults.py
ontobio/model/OBOGraph.py
ontobio/model/__init__.py
ontobio/model/association.py
ontobio/model/collections.py
ontobio/model/similarity.py
ontobio/neo/__init__.py
ontobio/neo/scigraph_ontology.py
ontobio/rdfgen/__init__.py
ontobio/rdfgen/assoc_rdfgen.py
ontobio/rdfgen/relations.py
ontobio/rdfgen/gocamgen/__init__.py
ontobio/rdfgen/gocamgen/collapsed_assoc.py
ontobio/rdfgen/gocamgen/errors.py
ontobio/rdfgen/gocamgen/filter_rule.py
ontobio/rdfgen/gocamgen/gocam_builder.py
ontobio/rdfgen/gocamgen/gocamgen.py
ontobio/rdfgen/gocamgen/gpad_extensions_mapper.py
ontobio/rdfgen/gocamgen/rdflib_sparql_wrapper.py
ontobio/rdfgen/gocamgen/subgraphs.py
ontobio/rdfgen/gocamgen/triple_pattern_finder.py
ontobio/rdfgen/gocamgen/utils.py
ontobio/sim/__init__.py
ontobio/sim/annotation_scorer.py
ontobio/sim/phenosim_engine.py
ontobio/sim/sim_engine.py
ontobio/sim/api/__init__.py
ontobio/sim/api/interfaces.py
ontobio/sim/api/owlsim2.py
ontobio/sim/api/owlsim3.py
ontobio/sim/api/semsearch.py
ontobio/sparql/__init__.py
ontobio/sparql/rdf2nx.py
ontobio/sparql/rdflib_bridge.py
ontobio/sparql/skos.py
ontobio/sparql/sparql_go.py
ontobio/sparql/sparql_ontol_utils.py
ontobio/sparql/sparql_ontology.py
ontobio/sparql/wikidata.py
ontobio/sparql/wikidata_ontology.py
ontobio/util/__init__.py
ontobio/util/go_utils.py
ontobio/util/obog2cg.py
ontobio/util/scigraph_util.py
ontobio/util/user_agent.py
ontobio/validation/__init__.py
ontobio/validation/metadata.py
ontobio/validation/rules.py
ontobio/validation/tools.py
ontobio/vocabulary/__init__.py
ontobio/vocabulary/categories.py
ontobio/vocabulary/relations.py
ontobio/vocabulary/similarity.py
ontobio/vocabulary/upper.py
tests/__init__.py
tests/test_alt_id.py
tests/test_assoc_writer.py
tests/test_assocfactory.py
tests/test_assocmodel.py
tests/test_bgiparser.py
tests/test_collections.py
tests/test_config.py
tests/test_ecomap.py
tests/test_enrich.py
tests/test_evidence_table.py
tests/test_gaference.py
tests/test_gafparser.py
tests/test_goassociation_model.py
tests/test_golr_associations.py
tests/test_golr_map2slim.py
tests/test_golr_query.py
tests/test_golr_search.py
tests/test_gpad_parser.py
tests/test_gpad_writer.py
tests/test_gpiparser.py
tests/test_hpoaparser.py
tests/test_lexmap.py
tests/test_lexmap_local.py
tests/test_local_json.py
tests/test_local_ttl.py
tests/test_map2slim.py
tests/test_mutable.py
tests/test_ontol.py
tests/test_owlsim2_int.py
tests/test_parse_ids.py
tests/test_parse_taxon.py
tests/test_phenosim_engine.py
tests/test_qc.py
tests/test_rdfgen.py
tests/test_relations.py
tests/test_remote_scigraph.py
tests/test_remote_sparql.py
tests/test_semsearch.py
tests/test_skos_local.py
tests/test_sparql_connection.py
tests/test_validation_rules.py
tests/test_wd.py
tests/test_wd_ontol.py
tests/test_write_obo.py