LICENSE
README.md
setup.py
OntoAligner.egg-info/PKG-INFO
OntoAligner.egg-info/SOURCES.txt
OntoAligner.egg-info/dependency_links.txt
OntoAligner.egg-info/requires.txt
OntoAligner.egg-info/top_level.txt
ontoaligner/__init__.py
ontoaligner/base/__init__.py
ontoaligner/base/configs.py
ontoaligner/base/dataset.py
ontoaligner/base/encoder.py
ontoaligner/base/model.py
ontoaligner/base/ontology.py
ontoaligner/encoder/__init__.py
ontoaligner/encoder/encoders.py
ontoaligner/encoder/fewshot.py
ontoaligner/encoder/lightweight.py
ontoaligner/encoder/naivconvoaei.py
ontoaligner/encoder/rag.py
ontoaligner/evaluation/__init__.py
ontoaligner/evaluation/evaluator.py
ontoaligner/evaluation/metrics.py
ontoaligner/ontology/__init__.py
ontoaligner/ontology/anatomy.py
ontoaligner/ontology/biodiv.py
ontoaligner/ontology/bioml.py
ontoaligner/ontology/commonkg.py
ontoaligner/ontology/food.py
ontoaligner/ontology/mse.py
ontoaligner/ontology/phenotype.py
ontoaligner/ontology_matchers/__init__.py
ontoaligner/ontology_matchers/fewshot/__init__.py
ontoaligner/ontology_matchers/fewshot/dataset.py
ontoaligner/ontology_matchers/fewshot/fewshot.py
ontoaligner/ontology_matchers/fewshot/models.py
ontoaligner/ontology_matchers/icv/__init__.py
ontoaligner/ontology_matchers/icv/icv.py
ontoaligner/ontology_matchers/icv/models.py
ontoaligner/ontology_matchers/icv/tasks/__init__.py
ontoaligner/ontology_matchers/icv/tasks/base.py
ontoaligner/ontology_matchers/icv/tasks/demo.py
ontoaligner/ontology_matchers/icv/tasks/loader.py
ontoaligner/ontology_matchers/icv/utils/__init__.py
ontoaligner/ontology_matchers/icv/utils/context_manager.py
ontoaligner/ontology_matchers/icv/utils/forward_tracer.py
ontoaligner/ontology_matchers/icv/utils/llm_layers.py
ontoaligner/ontology_matchers/icv/utils/pca.py
ontoaligner/ontology_matchers/icv/utils/rng_ctx.py
ontoaligner/ontology_matchers/lightweight/__init__.py
ontoaligner/ontology_matchers/lightweight/lightweight.py
ontoaligner/ontology_matchers/lightweight/models.py
ontoaligner/ontology_matchers/llm/__init__.py
ontoaligner/ontology_matchers/llm/llm.py
ontoaligner/ontology_matchers/llm/models.py
ontoaligner/ontology_matchers/rag/__init__.py
ontoaligner/ontology_matchers/rag/dataset.py
ontoaligner/ontology_matchers/rag/models.py
ontoaligner/ontology_matchers/rag/rag.py
ontoaligner/ontology_matchers/retrieval/__init__.py
ontoaligner/ontology_matchers/retrieval/models.py
ontoaligner/ontology_matchers/retrieval/retrieval.py
ontoaligner/pipeline/__init__.py
ontoaligner/pipeline/om_pipeline.py
ontoaligner/postprocess/__init__.py
ontoaligner/postprocess/process.py
ontoaligner/tools/__init__.py
ontoaligner/tools/workdir.py
ontoaligner/utils/__init__.py
ontoaligner/utils/io.py
tests/test_base.py
tests/test_encoder.py