LICENCE.txt
MANIFEST.in
README.md
requirements-cuda111.txt
requirements-cuda113.txt
requirements.txt
setup.py
bonito/__init__.py
bonito/aligner.py
bonito/data.py
bonito/fast5.py
bonito/io.py
bonito/mod_util.py
bonito/multiprocessing.py
bonito/nn.py
bonito/schedule.py
bonito/training.py
bonito/util.py
bonito/cli/__init__.py
bonito/cli/basecaller.py
bonito/cli/convert.py
bonito/cli/download.py
bonito/cli/duplex.py
bonito/cli/evaluate.py
bonito/cli/export.py
bonito/cli/train.py
bonito/cli/view.py
bonito/crf/__init__.py
bonito/crf/basecall.py
bonito/crf/model.py
bonito/ctc/__init__.py
bonito/ctc/basecall.py
bonito/ctc/model.py
bonito/data/README.md
bonito/models/README.md
bonito/models/configs/dna_r9.4.1@v1.toml
bonito/models/configs/dna_r9.4.1@v2.toml
bonito/models/configs/dna_r9.4.1@v3.toml
ont_bonito.egg-info/PKG-INFO
ont_bonito.egg-info/SOURCES.txt
ont_bonito.egg-info/dependency_links.txt
ont_bonito.egg-info/entry_points.txt
ont_bonito.egg-info/requires.txt
ont_bonito.egg-info/top_level.txt