.gitignore
README.md
pyproject.toml
examples/data_directory.txt
examples/input_parameters.txt
src/onion_clustering/__init__.py
src/onion_clustering/__version__.py
src/onion_clustering/classes.py
src/onion_clustering/functions.py
src/onion_clustering/main.py
src/onion_clustering/main_2d.py
src/onion_clustering/utilities.py
src/onion_clustering.egg-info/PKG-INFO
src/onion_clustering.egg-info/SOURCES.txt
src/onion_clustering.egg-info/dependency_links.txt
src/onion_clustering.egg-info/requires.txt
src/onion_clustering.egg-info/top_level.txt
src/onion_clustering/__pycache__/__init__.cpython-39.pyc
src/onion_clustering/__pycache__/classes.cpython-39.pyc
src/onion_clustering/__pycache__/functions.cpython-39.pyc
test/run_test.sh
test/input_multi/input_parameters.txt
test/input_uni/input_parameters.txt
test/output_multi/final_states.txt
test/output_multi/fraction_0.txt
test/output_multi/number_of_states.txt
test/output_uni/final_states.txt
test/output_uni/final_thresholds.txt
test/output_uni/fraction_0.txt
test/output_uni/number_of_states.txt
test/test_multi/.DS_Store
test/test_multi/RUN_TEST.sh
test/test_multi/all_cluster_IDs_xyz.dat
test/test_multi/data_directory.txt
test/test_multi/final_states.txt
test/test_multi/fraction_0.txt
test/test_multi/input_parameters.txt
test/test_multi/number_of_states.txt
test/test_multi/states_output.txt
test/test_uni/.DS_Store
test/test_uni/RUN_TEST.sh
test/test_uni/data_directory.txt
test/test_uni/final_states.txt
test/test_uni/final_thresholds.txt
test/test_uni/fraction_0.txt
test/test_uni/input_parameters.txt
test/test_uni/number_of_states.txt
test/test_uni/states_output.txt
test/test_uni/__pycache__/classes.cpython-39.pyc
test/test_uni/__pycache__/functions.cpython-39.pyc
test/test_uni/__pycache__/main.cpython-39.pyc