CMakeLists.txt
LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
cmake_aux/FindFFTW.cmake
cmake_aux/LICENSE
configs/synth_paper.toml
docs/arguments.py
docs/conf.py
docs/help.py
include/bsplineinterface/bsplineinterface.h
include/fftarma/fftarma.h
include/omniimg/omniimg.h
include/omnitable/omnitable.h
include/optimize/optimize.h
include/regression/regression.h
include/resample/resample.h
include/transform/transform.h
omni/__init__.py
omni/affine.py
omni/interface.py
omni/io.py
omni/masks.py
omni/path.py
omni/preprocessing.py
omni/register.py
omni/resample.py
omni/version.py
omni/warp.py
omni/contrib/__init__.py
omni/interfaces/__init__.py
omni/interfaces/afni.py
omni/interfaces/ants.py
omni/interfaces/common.py
omni/interfaces/fsl.py
omni/pipelines/__init__.py
omni/pipelines/bids.py
omni/pipelines/common.py
omni/pipelines/logging.py
omni/pipelines/preprocessing.py
omni/pipelines/anat/__init__.py
omni/pipelines/anat/align.py
omni/pipelines/anat/masks.py
omni/pipelines/anat/normalize.py
omni/pipelines/anat/processing.py
omni/pipelines/anat/segmentation.py
omni/pipelines/anat/stages.py
omni/pipelines/dwi/__init__.py
omni/pipelines/epi/__init__.py
omni/pipelines/epi/align.py
omni/pipelines/epi/processing.py
omni/pipelines/epi/stages.py
omni/pipelines/func/__init__.py
omni/pipelines/func/align.py
omni/pipelines/func/masks.py
omni/pipelines/func/normalize.py
omni/pipelines/func/processing.py
omni/pipelines/func/segmentation.py
omni/pipelines/func/stages.py
omni/scripts/__init__.py
omni/scripts/affine.py
omni/scripts/deoblique.py
omni/scripts/extract.py
omni/scripts/fmap_correct.py
omni/scripts/info.py
omni/scripts/intmat2nifti.py
omni/scripts/pipeline.py
omni/scripts/preprocess.py
omni/scripts/realign4d.py
omni/scripts/resample.py
omni/scripts/synthnoisemask.py
omni/scripts/synthpreproc.py
omni/scripts/synthregressionmask.py
omni/scripts/synthtarget.py
omni/scripts/synthunwarp.py
omni/scripts/warp.py
omni/scripts/common/__init__.py
omni/scripts/common/arguments.py
omni/scripts/common/command.py
omni/scripts/common/help.py
omnineuro.egg-info/PKG-INFO
omnineuro.egg-info/SOURCES.txt
omnineuro.egg-info/dependency_links.txt
omnineuro.egg-info/entry_points.txt
omnineuro.egg-info/not-zip-safe
omnineuro.egg-info/requires.txt
omnineuro.egg-info/top_level.txt
src/fftarma.cpp
src/omniimg.cpp
src/omniinterface.cpp
src/omnitable.cpp
src/optimize.cpp
src/regression.cpp
src/resample.cpp
src/transform.cpp
tests/interfaces/__init__.py
tests/interfaces/test_afni.py
tests/interfaces/test_ants.py
tests/interfaces/test_common.py
tests/interfaces/test_fsl.py
tests/pipelines/__init__.py
tests/pipelines/test_bids.py
tests/pipelines/test_common.py
tests/pipelines/test_logging.py
tests/pipelines/anat/__init__.py
tests/pipelines/anat/test_processing.py
tests/pipelines/anat/test_stages.py
tests/pipelines/epi/__init__.py
tests/pipelines/epi/test_processing.py
tests/pipelines/epi/test_stages.py
tests/pipelines/func/__init__.py
tests/pipelines/func/test_processing.py
tests/pipelines/func/test_stages.py
tests/scripts/__init__.py
tests/scripts/test_scripts.py
tests/scripts/common/__init__.py
tests/scripts/common/test_arguments.py
tests/scripts/common/test_command.py
tests/scripts/common/test_help.py
tools/generate_requirements_txt.py
tools/generate_version.py