LICENSE
setup.py
setup_omnigenbench.py
omnigenbench/__init__.py
omnigenbench.egg-info/PKG-INFO
omnigenbench.egg-info/SOURCES.txt
omnigenbench.egg-info/dependency_links.txt
omnigenbench.egg-info/entry_points.txt
omnigenbench.egg-info/requires.txt
omnigenbench.egg-info/top_level.txt
omnigenbench/auto/__init__.py
omnigenbench/auto/auto_bench/__init__.py
omnigenbench/auto/auto_bench/auto_bench.py
omnigenbench/auto/auto_bench/auto_bench_cli.py
omnigenbench/auto/auto_bench/config_check.py
omnigenbench/auto/auto_train/__init__.py
omnigenbench/auto/auto_train/auto_train.py
omnigenbench/auto/auto_train/auto_train_cli.py
omnigenbench/auto/bench_hub/__init__.py
omnigenbench/auto/bench_hub/bench_hub.py
omnigenbench/auto/config/__init__.py
omnigenbench/auto/config/auto_config.py
omnigenbench/cli/__init__.py
omnigenbench/cli/omnigenome_cli.py
omnigenbench/cli/commands/__init__.py
omnigenbench/cli/commands/base.py
omnigenbench/cli/commands/bench/__init__.py
omnigenbench/cli/commands/bench/bench_cli.py
omnigenbench/cli/commands/rna/__init__.py
omnigenbench/cli/commands/rna/rna_design.py
omnigenbench/src/__init__.py
omnigenbench/src/abc/__init__.py
omnigenbench/src/abc/abstract_dataset.py
omnigenbench/src/abc/abstract_explainer.py
omnigenbench/src/abc/abstract_metric.py
omnigenbench/src/abc/abstract_model.py
omnigenbench/src/abc/abstract_tokenizer.py
omnigenbench/src/dataset/__init__.py
omnigenbench/src/dataset/omni_dataset.py
omnigenbench/src/explainability/__init__.py
omnigenbench/src/explainability/epistasis/__init__.py
omnigenbench/src/explainability/epistasis/explainer.py
omnigenbench/src/explainability/sequence_logo/__init__.py
omnigenbench/src/explainability/sequence_logo/explainer.py
omnigenbench/src/explainability/shared_methods/__init__.py
omnigenbench/src/explainability/shared_methods/squid_explainer.py
omnigenbench/src/explainability/shared_methods/tsne_explainer.py
omnigenbench/src/explainability/visualization_2d/__init__.py
omnigenbench/src/explainability/visualization_2d/explainer.py
omnigenbench/src/lora/__init__.py
omnigenbench/src/lora/lora_model.py
omnigenbench/src/metric/__init__.py
omnigenbench/src/metric/classification_metric.py
omnigenbench/src/metric/metric.py
omnigenbench/src/metric/ranking_metric.py
omnigenbench/src/metric/regression_metric.py
omnigenbench/src/misc/__init__.py
omnigenbench/src/misc/utils.py
omnigenbench/src/model/__init__.py
omnigenbench/src/model/module_utils.py
omnigenbench/src/model/augmentation/__init__.py
omnigenbench/src/model/augmentation/model.py
omnigenbench/src/model/classification/__init__.py
omnigenbench/src/model/classification/model.py
omnigenbench/src/model/embedding/__init__.py
omnigenbench/src/model/embedding/model.py
omnigenbench/src/model/mlm/__init__.py
omnigenbench/src/model/mlm/model.py
omnigenbench/src/model/regression/__init__.py
omnigenbench/src/model/regression/model.py
omnigenbench/src/model/regression/resnet.py
omnigenbench/src/model/rna_design/__init__.py
omnigenbench/src/model/rna_design/model.py
omnigenbench/src/model/seq2seq/__init__.py
omnigenbench/src/model/seq2seq/model.py
omnigenbench/src/tokenizer/__init__.py
omnigenbench/src/tokenizer/bpe_tokenizer.py
omnigenbench/src/tokenizer/kmers_tokenizer.py
omnigenbench/src/tokenizer/single_nucleotide_tokenizer.py
omnigenbench/src/trainer/__init__.py
omnigenbench/src/trainer/accelerate_trainer.py
omnigenbench/src/trainer/base_trainer.py
omnigenbench/src/trainer/hf_trainer.py
omnigenbench/src/trainer/trainer.py
omnigenbench/utility/__init__.py
omnigenbench/utility/ensemble.py
omnigenbench/utility/hub_utils.py
omnigenbench/utility/dataset_hub/__init__.py
omnigenbench/utility/dataset_hub/dataset_hub.py
omnigenbench/utility/model_hub/__init__.py
omnigenbench/utility/model_hub/model_hub.py
omnigenbench/utility/pipeline_hub/__init__.py
omnigenbench/utility/pipeline_hub/pipeline.py
omnigenbench/utility/pipeline_hub/pipeline_hub.py
tests/test_dataset_patterns.py
tests/test_examples_syntax.py
tests/test_model_loading.py
tests/test_rna_functions.py
tests/test_training_patterns.py