Metadata-Version: 2.1
Name: omicfate
Version: 0.0.1
Summary: OmicFate: Unraveling the Secrets of Cellular Fate Determination
Keywords: bioinformatics,deep-learning,scRNA-seq,RNA-seq
Author-email: Zehua Zeng <starlitnightly@gmail.com>
Requires-Python: >=3.8
Description-Content-Type: text/markdown
Classifier: Intended Audience :: Science/Research
Classifier: Natural Language :: English
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Dist: numpy>=1.22, <1.24
Requires-Dist: scanpy>=1.9
Requires-Dist: pandas>=1.0.3, <=1.5.3
Requires-Dist: matplotlib<3.7
Requires-Dist: scikit-learn>=1.2
Requires-Dist: scipy>=1.8, <1.12
Requires-Dist: seaborn>=0.11
Requires-Dist: scikit-misc>=0.1
Requires-Dist: palantir
Project-URL: Github, https://github.com/Starlitnightly/omicfate

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<img src="https://raw.githubusercontent.com/Starlitnightly/cellfate/master/assets/logo.png" width="400">
</h1><br>

[![pypi-badge](https://img.shields.io/pypi/v/omicverse)](https://pypi.org/project/omicverse) [![Documentation Status](https://readthedocs.org/projects/omicverse/badge/?version=latest)](https://omicverse.readthedocs.io/en/latest/?badge=latest) [![pypiDownloads](https://static.pepy.tech/badge/omicfate)](https://pepy.tech/project/omicverse) [![condaDownloads](https://img.shields.io/conda/dn/conda-forge/omicverse?logo=Anaconda)](https://anaconda.org/conda-forge/omicverse) [![License:GPL](https://img.shields.io/badge/license-GNU-blue)](https://img.shields.io/apm/l/vim-mode)

**`OmicVerse`** is the fundamental package for multi omics included **bulk ,single cell and spatial RNA-seq** analysis with Python. For more information, please read our paper: [OmicVerse: a framework for bridging and deepening insights across bulk and single-cell sequencing](https://www.nature.com/articles/s41467-024-50194-3)
