OmicVerse || Single-cell Analysis
Author: OmicVerse Team
Description: OmicVerse Single Cell Analysis Platform

Kernel
DF
Rows Cols
Parameters
adata 状态
Analysis Status
Waiting for data upload...

###### 分析读取模式

完整加载数据到内存，支持所有分析功能

拖放或点击选择文件

###### 仅预览模式

低内存读取，不支持分析操作（backed='r'）

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###### Filename

0 cells • 0 genes
预览模式 — 分析功能已禁用，数据以低内存方式读取
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Processing data...
可视化控制
坐标轴预设 Custom
Color by
Gene Expression
Palette (continuous)
X Axis
Y Axis
Categorical palette
Min (vmin)
Max (vmax)
Point size Auto
Opacity 0.7
Density adjust 1.00
Enable density adjust
Renderer
WebGL supports hover, zoom & animations for any dataset size

###### Trajectory Visualization

Pseudotime Embedding
Click Generate to render
Pseudotime column
Embedding
Colormap
Point size
Overlay PAGA graph
Cluster column (groups)
Min edge width
Node size scale
Gene Trend Heatmap
Enter genes then click Generate
Genes (comma or newline separated)
Pseudotime column
Data layer
Pseudotime bins
Colormap

###### Differential Expression Analysis

Volcano Plot
Run DEG analysis first, then click Generate
FC threshold
padj threshold
Point size
Label top N
Violin Plot
Click a gene in the results table or type below
Genes (comma separated)
Group by
Data layer
DEG Results 0 / 0
|log₂FC| ≥ 0
padj ≤ 1.00
Expr% ≥ 0%
Direction
Search gene

Gene | log₂FC | padj | Expr%(ctrl) | Expr%(test)
--- | --- | --- | --- | ---
Run DEG analysis to see results

Click a gene row to add it to the Violin Plot

###### Differential Cell Type Composition

Cell Type Composition
Run DCT analysis first, then click Generate
Effects / Beeswarm
Run DCT analysis first, then click Generate
DCT Results 0

Cell Type | logFC / Effect | p-value | FDR | Significant
--- | --- | --- | --- | ---
Run DCT analysis to see results

Single-cell Agent
Harness
No runtime state yet
Pending approvals
No pending approvals
Pending questions
No pending questions
Runtime tasks
No tasks yet
Latest trace
No trace loaded
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##### Parameters

Python 环境信息
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系统信息
Python 环境
GPU / 加速
核心包版本

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OmicVerse

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##### Profile

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Python 环境管理

Package not found on PyPI.
Mirror:
Extra args:
`uv pip install <package>`
Channels:
Extra args:
`mamba install -c conda-forge <package>`
Output

    Ready.

###### 代码参考

Parameter | Type | Default | Description
--- | --- | --- | ---