LICENSE
README.md
pyproject.toml
src/omdctk/__init__.py
src/omdctk/check_fastqs.py
src/omdctk/check_metadata_ENA.py
src/omdctk/check_metadata_values.py
src/omdctk/concat_datasets.py
src/omdctk/download_fastqs.py
src/omdctk/download_metadata_ENA.py
src/omdctk/filter_metadata.py
src/omdctk/make_treatment_template.py
src/omdctk/merge_metadata.py
src/omdctk/omdctk_common.py
src/omdctk/test_omdctk.py
src/omdctk/treat_fastqs.py
src/omdctk/treat_metadata.py
src/omdctk.egg-info/PKG-INFO
src/omdctk.egg-info/SOURCES.txt
src/omdctk.egg-info/dependency_links.txt
src/omdctk.egg-info/entry_points.txt
src/omdctk.egg-info/requires.txt
src/omdctk.egg-info/top_level.txt
src/omdctk/test_info/CRA001372_check_fastqs_Generic_reference.log
src/omdctk/test_info/CRA001372_filterfile_example.tsv
src/omdctk/test_info/CRA001372_main_metadata_example.tsv
src/omdctk/test_info/CRA001372_publication_metadata_example.tsv
src/omdctk/test_info/PRJEB10949_check_fastqs_ENA_reference.log
src/omdctk/test_info/PRJEB10949_check_metadata_ENA_reference.log
src/omdctk/test_info/PRJEB10949_filterfile_example.tsv
src/omdctk/test_info/PRJEB10949_publication_example.tsv
src/omdctk/test_info/check_metadata_values_example_reference.log
src/omdctk/test_info/curated_CRA001372_external_example_metadata_final.tsv
src/omdctk/test_info/curated_PRJEB10949_ENA_example_metadata_final.tsv
src/omdctk/test_info/filtered_CRA001372_URLS_example.txt
src/omdctk/test_info/filtered_manifest_CRA001372_example.tsv
src/omdctk/test_info/treatment_template_filtered_CRA001372_example.tsv
src/omdctk/test_info/treatment_template_filtered_PRJEB10949_merged_metadata_example.tsv
src/omdctk/test_info/variables_dictionary_example.tsv