Metadata-Version: 2.1
Name: omdctk
Version: 1.0
Summary: OMD Curation Toolkit
Author-email: Samuel Piquer Esteban <samuel.piquer@uv.es>
Project-URL: GitHub, https://github.com/tbcgit/omdctk
Project-URL: Documentation, https://github.com/tbcgit/omdctk/wiki
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.10
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: aioftp
Requires-Dist: aiohttp
Requires-Dist: parfive
Requires-Dist: termcolor
Requires-Dist: tabulate
Requires-Dist: tqdm
Requires-Dist: mg-toolkit
Requires-Dist: pandas

# OMD Curation Toolkit
Omics Dataset Curation Toolkit (**OMD Curation Toolkit**) is a suite of programs designed for the download and curation of metadata and fastq files of public omics datasets. Centered on the European Nucleotide Archive (ENA), this workflow provides a standardized framework intended to facilitate the arduous task of curating public omics projects.

## Getting started
For further details, see the following:
* **Documentation** (https://github.com/tbcgit/omdctk/wiki)
* **Installation** (https://github.com/tbcgit/omdctk/wiki/Installation)
* **Tutorial Full Example** (https://github.com/tbcgit/omdctk/wiki/Tutorial-Full-Example)
  
## Acknowledgements
This package has been jointly developed in the **Theory, Bioinformatics and Computation** (https://www.uv.es/tbc) and **Evolutionary Genetics** (https://www.uv.es/symbiosis) research groups at the **Institute for Integrative Systems Biology (I2SysBio)**, University of Valencia and Consejo Superior de Investigaciones Científicas (CSIC), Valencia, Spain. SPE is supported by an FPU grant from the Spanish Ministry of Universities (Reference: FPU20/05756).

## License
This package is licensed under the MIT License. See the LICENSE file for details.
