LICENSE
MANIFEST.in
README.md
VERSION
requirements.txt
setup.py
oligopipe/__init__.py
oligopipe/__main__.py
oligopipe/cli_entry.py
oligopipe/cli_output.py
oligopipe/cli_parser.py
oligopipe/cli_utils.py
oligopipe/entities.py
oligopipe/network.py
oligopipe/pipelines.py
oligopipe/predictors.py
oligopipe/predictors_config.json
oligopipe/repositories.py
oligopipe/utils.py
oligopipe.egg-info/PKG-INFO
oligopipe.egg-info/SOURCES.txt
oligopipe.egg-info/dependency_links.txt
oligopipe.egg-info/entry_points.txt
oligopipe.egg-info/requires.txt
oligopipe.egg-info/top_level.txt
oligopipe/digenic_effect/DE_model_2021_04.p
oligopipe/digenic_effect/__init__.py
oligopipe/digenic_effect/oli_eff_HG19.pickle
oligopipe/digenic_effect/oli_eff_HG38.pickle
oligopipe/digenic_effect/run_de.py
oligopipe/oligogenic/pathway_mapping.py
oligopipe/oligogenic/ppi_mapping.py
oligopipe/oligopipe.egg-info/PKG-INFO
oligopipe/oligopipe.egg-info/SOURCES.txt
oligopipe/oligopipe.egg-info/dependency_links.txt
oligopipe/oligopipe.egg-info/entry_points.txt
oligopipe/oligopipe.egg-info/requires.txt
oligopipe/oligopipe.egg-info/top_level.txt
oligopipe/preprocess/__init__.py
oligopipe/preprocess/annotation.py
oligopipe/preprocess/calc_aa_diff.py
oligopipe/preprocess/filters.py
oligopipe/preprocess/input_parsers.py
oligopipe/preprocess/preprocessing.py
oligopipe/varcopp/VarCoPP_400BRF_2023_04.pickle.gz
oligopipe/varcopp/VarCoPP_BRF_2023_01.pickle.gz
oligopipe/varcopp/VarCoPP_HG38.pickle.gz
oligopipe/varcopp/VarCoPP_model_2022_06.pickle.gz
oligopipe/varcopp/__init__.py
oligopipe/varcopp/interpreter.py
oligopipe/varcopp/post_filtering.py
oligopipe/varcopp/transform_data.py
test_data/__init__.py
test_data/example_hpos_file.txt
test_data/example_vcf_1_hg19.vcf
test_data/example_vcf_1_hg38.vcf
test_data/example_vcf_2_gene_panel.txt
test_data/example_vcf_2_hg19.vcf
test_data/example_vcf_2_hg38.vcf
test_data/input_config.yaml