from setuptools import setup, Extension, find_packages
from setuptools.command.build_ext import build_ext
import sys
import setuptools
from pathlib import Path

this_directory = Path(__file__).parent
long_description = (this_directory / "README.md").read_text()

data_files_to_include = [('', ['README.md', 'LICENSE'])]
__version__ = '0.0.6'

class get_pybind_include(object):
    """Helper class to determine the pybind11 include path
    The purpose of this class is to postpone importing pybind11
    until it is actually installed, so that the ``get_include()``
    method can be invoked. """

    def __str__(self):
        import pybind11
        return pybind11.get_include()


ext_modules = [
    Extension(
        'sequence_generation',
        # Sort input source files to ensure bit-for-bit reproducible builds
        sorted(['olha/main.cpp', 'olha/SequenceGeneration.cpp']),
        include_dirs=[
            # Path to pybind11 headers
            get_pybind_include(),
        ],
        language='c++'
    ),
]


# cf http://bugs.python.org/issue26689
def has_flag(compiler, flagname):
    """Return a boolean indicating whether a flag name is supported on
    the specified compiler.
    """
    import tempfile
    import os
    with tempfile.NamedTemporaryFile('w', suffix='.cpp', delete=False) as f:
        f.write('int main (int argc, char **argv) { return 0; }')
        fname = f.name
    try:
        compiler.compile([fname], extra_postargs=[flagname])
    except setuptools.distutils.errors.CompileError:
        return False
    finally:
        try:
            os.remove(fname)
        except OSError:
            pass
    return True


def cpp_flag(compiler):
    """Return the -std=c++[11/14/17] compiler flag.
    The newer version is prefered over c++11 (when it is available).
    """
    flags = ['-std=c++17', '-std=c++14', '-std=c++11']

    for flag in flags:
        if has_flag(compiler, flag):
            return flag

    raise RuntimeError('Unsupported compiler -- at least C++11 support '
                       'is needed!')


class BuildExt(build_ext):
    """A custom build extension for adding compiler-specific options."""
    c_opts = {
        'msvc': ['/EHsc'],
        'unix': [],
    }
    l_opts = {
        'msvc': [],
        'unix': [],
    }

    if sys.platform == 'darwin':
        darwin_opts = ['-stdlib=libc++', '-mmacosx-version-min=10.7']
        c_opts['unix'] += darwin_opts
        l_opts['unix'] += darwin_opts

    def build_extensions(self):
        ct = self.compiler.compiler_type
        opts = self.c_opts.get(ct, [])
        link_opts = self.l_opts.get(ct, [])
        if ct == 'unix':
            opts.append(cpp_flag(self.compiler))
            if has_flag(self.compiler, '-fvisibility=hidden'):
                opts.append('-fvisibility=hidden')

        for ext in self.extensions:
            ext.define_macros = [('VERSION_INFO', '"{}"'.format(self.distribution.get_version()))]
            ext.extra_compile_args = opts
            ext.extra_link_args = link_opts
        build_ext.build_extensions(self)

setup(name='olha',
      version=__version__,
      description='Fast generation of TCR/BCR sequences with olga',
      long_description_content_type="text/markdown",
      long_description=long_description,
      url='',
      author='Thomas Dupic',
      author_email='dupic.thomas@gmail.com',
      license='MIT',
      classifiers=[
            'Development Status :: 3 - Alpha',
            'Intended Audience :: Developers',
            'Intended Audience :: Healthcare Industry',
            'Intended Audience :: Science/Research',
            'Topic :: Scientific/Engineering :: Bio-Informatics',
            'Topic :: Scientific/Engineering :: Physics',
            'Topic :: Scientific/Engineering :: Medical Science Apps.',
            'Natural Language :: English',
            'Programming Language :: Python :: 3.6',
            ],
      packages=['olha'],
      setup_requires=['olga>=1.2.4', 'pybind11>=2.5.0'],
      cmdclass={'build_ext': BuildExt},
      ext_modules=ext_modules,
      package_data = { },
      data_files = data_files_to_include,
      include_package_data=True,
      zip_safe=False)
