Metadata-Version: 2.1
Name: oldaicsimageio
Version: 0.6.6
Summary: A generalized scientific image processing module from the Allen Institute for Cell Science.
Home-page: UNKNOWN
Author: AICS
Author-email: !AICS_SW@alleninstitute.org
License: Allen Institute Software License
Description: # AICS Image library
        The oldaicsimageio package is designed to provide an easy interface with CZI, OME-TIFF, and PNG file formats.
        
        ## Level of Support
        We are not currently supporting this code for external use, but simply releasing it 
        to the community AS IS. It is used for within our organization. We are not able to 
        provide any guarantees of support. The community is welcome to submit issues, but 
        you should not expect an active response.
        
        ## Development
        See [BUILD.md](BUILD.md) for information operations related to developing the code.
        
        ## Usage
        
        ```
        from oldaicsimageio import AICSImage
        
        img = AICSImage("my_ome.tiff_or_tiff_or_czi")
        
        # Get the image data as TCZYX
        img.data
        
        # Get channel information if you have an OME tiff
        pixels = img.metadata.image().Pixels
        channels = [pixels.Channel(i) for i in range(pixels.get_channel_count())]
        channels = [{"name": c.get_Name(), "index": c.get_ID()} for c in channels]
        
        
        # Note on channel id differences between oldaicsimageio.OMEXML and lxml.etree._Element:
                # Under lxml.etree._Element, Channel Id looks like the following: `'Channel:0'`
                # Where the single integer corresponds to the channel dimension index in image data.
                # Under oldaicsimageio, the same Channel Id looks like the following: `'Channel:0:0'`
                # Where it is the second of the two integers that corresponds to the channel dimension index in image data.
                # Regardless of structure, these can both be parsed as integers with the following:
                # `int(channel_id.split(":")[-1])`
        
        ```
Platform: UNKNOWN
Description-Content-Type: text/markdown
Provides-Extra: test_group
Provides-Extra: lint_group
Provides-Extra: interactive_dev_group
