benchmarks/__init__.py,sha256=CwTLT6eDwKJVAETwZJ5NqqQ6gR3jn5zq2GiTzWOY4cg,1302
benchmarks/benchmark_runner.py,sha256=dAE40RK7SLyJ-hq7eekR76CorKaaqyNlE-p3s2JiZBw,18551
benchmarks/mutation_benchmark.py,sha256=BrQ_8bClab5zpvWRtein9go6dJP471LsGCxeXs0LYkE,16576
benchmarks/web_backend_test.py,sha256=y41CR4M-CC-uiptl5nypgb2qXHb-C5Uyy0BIPOC9xVM,16787
docs/source/conf.py,sha256=thEUuueyzQ1il2qaxE9tEjOA6jK7P16UcxcQgoPzd9Q,991
examples/ligand_aware_folding_demo.py,sha256=eS6m8DBIfnna9bY_Bt9LrYXpUs1V1IUhv_q8Z-yLeQM,15702
examples/mutation_prediction_demo.py,sha256=Xc3Cz3pM9rCQ0y9oQSlbAGUe-K0Pu9ezowA01PKHlDI,12395
examples/mutation_scanning_demo.py,sha256=CTlw7q0FPnZbCmEeGTy-0fOkhkAM_HhKaugsUC_q-Hs,16995
experiments/test_templates_openfold.py,sha256=8Zue8SWP6aCGt1ZfcihoaD0PXW-LJEr5nvVDCOoYcR4,20372
odinfold-1.0.0a8.dist-info/licenses/LICENSE,sha256=eneg-bSXFdOxJLOWB8U8Xfh5XSb3quCLEubbubHsGkA,11353
openfold/__init__.py,sha256=aiY1AaOizHqLA_opV3hHmex_jVMIeur7CJgnK0bbX5o,157
openfold/config.py,sha256=G542d72zFa2wrgWjpytLE5lTZ-2DeYrcF4Tib8le6s8,36292
openfold/benchmarks/comprehensive_benchmark.py,sha256=Kxv_JJ5YI4C70i7zN-fyQ7_gaRExbYcrzkR2opbjDP0,21864
openfold/cuda_kernels/setup.py,sha256=JYZ-ypq7LPm0mBDvGNz8JRV-FZu_aMUN_Ukb2kMkPko,2076
openfold/model/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
openfold/model/cuda_kernels_interface.py,sha256=u5aWOz-NA5qeQtE9l-qWgVoatviLEhy4qbAWGtTxdLI,13015
openfold/model/cuda_triangle_ops.py,sha256=WCwxQ82JUN98RELx89WbPnMRi2tOJ1pUpv_lg1uziDw,13728
openfold/model/delta_predictor.py,sha256=fDrUmkr9_6ww4Wp4Vwg-koSAOt7cgZv3_jXfHx6iJCw,16406
openfold/model/dropout.py,sha256=GzapU35LSC8Ag-XU7U5J6ThhaNEz13Gq88WtsLOlqow,2222
openfold/model/embedders.py,sha256=7YLCs4436zN3hnKXx8pDDALUPw9oJsQDKCLjvu6aBg4,29057
openfold/model/evoformer.py,sha256=4JC0t95QhS0RJiFIKwbTnDVeLx5FiS5o0iB8kbTLmu0,40120
openfold/model/heads.py,sha256=WqaICvgr3jM1do3iwZCF_WkX-kXWn4dGiCXQaO8TF6Q,7306
openfold/model/ligand_integration.py,sha256=o2oD8JotHWPanXo0y3uYxG0N2AmRGyxLWm5TUD-REtw,18120
openfold/model/model.py,sha256=7b1Uv8EGr_WZ9LqZBd8nUpXcw7653X-vHuuwsSFehy4,22058
openfold/model/msa.py,sha256=um6IfrcY_fDLDerfLR75LRyRMu7JP3GMsb8IjU_KovQ,14002
openfold/model/outer_product_mean.py,sha256=xG1AWxvtobDi1L2Fdht7Zvs9Ft3cEjxH3IGeexuDPkI,4669
openfold/model/pair_transition.py,sha256=afpevlNI4tlhoSc5HgoREysZ58II3g19G30FyupeIDU,2798
openfold/model/primitives.py,sha256=kd32rwvIAtirRe8ZZ2BY2Y0RAWu3EcuC44pT2uQF1-k,25163
openfold/model/structure_module.py,sha256=Bu4GZeBx1JE0jeNXdVZV_xe1EBQ3FWRATBu6_oQDFzs,37895
openfold/model/template.py,sha256=h1TNKVH0eD8xJtzaIKay3WsV_d34-06x2zZa4sbXGQs,22225
openfold/model/torchscript.py,sha256=fnEXHxelGESJrPzDpQoV7jLqaybV_QHbt-fgfoxb5l0,6285
openfold/model/triangular_attention.py,sha256=e23oJ0wVTeyTm5KwoKoo0syozw9qlVgXjO_FqvUgLn0,4821
openfold/model/triangular_multiplicative_update.py,sha256=ryUycFDBD6sKv7U9rxDfhxKo3JiQDP6ppSgprMEwTJo,22929
openfold/np/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
openfold/np/protein.py,sha256=M5ouu9GNjo7nk4cZ8pefoB85g-wwEkX-hOO13bFDIz0,22691
openfold/np/residue_constants.py,sha256=GclNDBBM9FqzA--1sh_tNudGQCFjt0LaBya9KoSEpSs,46578
openfold/np/relax/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
openfold/np/relax/amber_minimize.py,sha256=APkl4WEbkKPGDhTj19YFWWsUKcCBCelaX5CcjHt33kA,20635
openfold/np/relax/cleanup.py,sha256=DQm1N8ycFqm2yFwJfDrkpAAoiMJJFS8LNVfb_VjkZxo,5051
openfold/np/relax/relax.py,sha256=2-cM4TjGf3WW7UrfF2utO0L-8BS662O_ik-XSXLgz78,3971
openfold/np/relax/utils.py,sha256=EoSue8ylyvplT-QxRewvPSTU_NqKy75Vx3WhKIlRiAk,3057
openfold/services/mutation_with_refinement.py,sha256=i3jYHizfjGvkppx9Xoi1VwdC0ul47yGEcDAe3osn67g,19743
openfold/services/optimized_mutation_server.py,sha256=aCPYnoZ_vUwH2rst8bZI6PINE1hqxgzVo7wPflLWDec,20942
openfold/services/websocket_server.py,sha256=FpAmBUnNaKMoVDfbJJ1A3jtLEF7tUOaJJtdgB7tXmIE,28178
openfold/training/delta_trainer.py,sha256=0Txd1qdwgMhLDiUeNFTdR7zpOwTTLIOLsTGLADB_oVQ,18542
openfold/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
openfold/utils/all_atom_multimer.py,sha256=I0ON0Lww29xoCKdz0B9v1Q-grRI_50ddQFWVAWu95lU,18301
openfold/utils/argparse_utils.py,sha256=HtUdzyxxF9YdOl_qXhmds-2GgAJGuZswnOnarmAuK90,1021
openfold/utils/callbacks.py,sha256=unl5eYqhZ0o2ZiExtliaSHE0TZJCfSFYThAEf3yZmNA,578
openfold/utils/checkpointing.py,sha256=ks7Vcz-ras4dk6iAdkqEL-soGIyyxMqSIeSKAvqKLyg,2770
openfold/utils/chunk_utils.py,sha256=DEHlypewPskKT2I-QMOtk1XKK3eYR6PsUYhOWnlgbxw,14322
openfold/utils/exponential_moving_average.py,sha256=Dge6bOCYRyQe5VzuINnFnpn88rvNG3GruTXbv3huZX0,2353
openfold/utils/feats.py,sha256=L4Aj8H-EmVaRWLDt-afaemo7N3r34XX91HLMC1vq60w,8527
openfold/utils/gpu_memory_optimization.py,sha256=qgshEjr762P9q1UHEKzZsnfkVKsUHkSkfM7O4UtT9Bk,20217
openfold/utils/import_weights.py,sha256=7vN0gznGidQovhlNM8pVGOdQto6PTZPP6-ewyiMm72M,27477
openfold/utils/logger.py,sha256=IpdsExzWfzkLVOtZBGP3NM3S0Fa7xITvthH4pN0H2HU,2800
openfold/utils/loss.py,sha256=6CwLnPmzn0Oc6IKi06o850JSpE2KGi_-oYq5kfIFsU0,60786
openfold/utils/lr_schedulers.py,sha256=hqM-D0Q8ppr-FBS0eUsw4rVTZGig5Dul9CICjux5j5I,2804
openfold/utils/md_refinement.py,sha256=nh6eZ0VxtRONvRthQ_WgqK_eTio71DYiBgUFZRV00vE,20706
openfold/utils/mmseqs2_integration.py,sha256=XV5am_BS13J83tFmH9VX0nPC1j84wlWX3VoFb_MvWgg,18745
openfold/utils/multi_chain_permutation.py,sha256=xIUEjJUptt2yD24mSNNL4lfuL9r0j3Yc4rjxZcMKixA,25661
openfold/utils/precision_utils.py,sha256=W15cbxksgWut7VNf1yr4H0k9SfhKmhquKvE9ik6TKIs,818
openfold/utils/quantization.py,sha256=bdDPTQg8lTuXe0R246_bkuA42EDShgwMCrSM1wj2KyY,16092
openfold/utils/rigid_utils.py,sha256=c6dYQLLJvoVWQ6EK8GZB6nN9lkEthT7bAq7i2ywpJRQ,43966
openfold/utils/script_utils.py,sha256=AXm6JE0sPGIdd-IMFP6hrV2fM3BbqirkUEom-aPAnUM,8952
openfold/utils/superimposition.py,sha256=ieq9AT49X5Zlhq8cp4zpNc0ZHUgcrlcG9IU11TkqqqU,3325
openfold/utils/tensor_utils.py,sha256=X3aHa4wntvke-yguLNg1KTGX9r4GvpAVkd7p0TWsm_U,3678
openfold/utils/trace_utils.py,sha256=evGNvnp4SFLj4MUKUirkHqWU5FF3CqJ8kppC12QOvfs,15943
openfold/utils/validation_metrics.py,sha256=4v_7QiKg4J27wPZQCmeMzBIK7Ve4kq3xEa1KecDvfgA,2028
openfold/utils/geometry/__init__.py,sha256=x1A9B9_yRx5vCJxBRkWcCLRIUS7Gby7zrfm_KOKQ0PY,1069
openfold/utils/geometry/quat_rigid.py,sha256=5P7328fJ0cSRRZITEGTKLqe_-AQjlpM-B6UfwfePFIg,1275
openfold/utils/geometry/rigid_matrix_vector.py,sha256=vbbSIr1UU0QN8GOTLQ7x4w_ynvX8UPuW_5X_u5wJLUk,6191
openfold/utils/geometry/rotation_matrix.py,sha256=Ca_jUtAFezTB-lPSXkayQSslVB72bz0QZDQYAc4881Q,7054
openfold/utils/geometry/test_utils.py,sha256=QQOWSgE7crAbMgcULsEHOEwp_uiU8ZEeo5aA05rcIDk,4020
openfold/utils/geometry/utils.py,sha256=WFqPlANufJ9PQ7yQJpl6LX6N2mef6xrm-_2bTQhGVgA,779
openfold/utils/geometry/vector.py,sha256=t1oyK4MQe-Z_SrhF8TbtHJ4TMVwsOb7-SDxCl9WAk7M,7792
openfold/utils/kernel/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
openfold/utils/kernel/attention_core.py,sha256=05K8eM-AAon_Fz4rZZejyk2mBO4zetUjgsilZNdIO3M,3296
openfoldpp/setup.py,sha256=7WO-H4PMkSZNjL7xY8Cq04eZ9JoD11YSVuNVws-T1mA,1770
openfoldpp/test_migration.py,sha256=coCuKRw01WoAz7HxwWmielvIZ9ThaInwHILn0PP4cA8,5343
openfoldpp/confidence/__init__.py,sha256=kAHWDy4-iiVxt3D-NY1AXHAwlEMqz_57ZX1RzOGgOGw,559
openfoldpp/confidence/confidence_estimator.py,sha256=Oapn8GHMOLbBP-o-0qeKHToX2DofT4YV0q4I1fE0CtQ,16237
openfoldpp/confidence/early_exit.py,sha256=HLtpC_WifDy6h676uOFFFyCZYuiqtgCU06LjiFEEyPU,18044
openfoldpp/confidence/tm_score_predictor.py,sha256=DbokMA8-Fs8FvmJzUleJ3HPp_Td0ddKVBry3BoEgs2k,14680
openfoldpp/docking/__init__.py,sha256=tYS8P1fNxGmvDzeJYtTJm47MLnAoamvxfFVemMMtgV0,667
openfoldpp/docking/docking_utils.py,sha256=EKoHukFcYntUonUI27vtjoZwLbU8hO-jZxUDavp0xgU,11407
openfoldpp/docking/gnina_docking.py,sha256=7TlJLrgq3NsKjpcbiCZDWo9rvyjawY0C8HA6h96dPG4,13634
openfoldpp/docking/pose_analysis.py,sha256=k017QFkCJtjHKOhDr55wC0w3vpBXkN6ymkhk7265FWo,17399
openfoldpp/docking/vina_docking.py,sha256=bKcsasOQ5pq2t94fdtUZNJrNfeDxtYPlNRx1RnQvGQs,15676
openfoldpp/ligand/__init__.py,sha256=7HwLCKmJa0UGl2uGjNx5HrdeyZ-dCzwVKpmg-1qpCDc,563
openfoldpp/ligand/ligand_cross_attention.py,sha256=_1KXgVgFXGnPHEeF1Y-jAA_A1Qhx1mLLEKJWwndjAs0,13708
openfoldpp/ligand/ligand_encoder.py,sha256=iZzGV0ideLKs5Fn3enaA8AiwT409Jd1RymbbbVOWr6s,13851
openfoldpp/ligand/ligand_utils.py,sha256=5gG-zwLbo25RLGcutKAvXhYfh9gMwEBvJuCJJI9JXMo,11729
openfoldpp/modules/flash_triangle_attention.py,sha256=QMDBggj415e21NG2u-Qwqjj5t7xZFLIxxtHiHZLHdBc,12974
openfoldpp/modules/fused_triangle_multiplication.py,sha256=D8ybMwqYpvOkj4uO1RkjWY4f_Ueu5aL0zsMW4dmVfDs,16873
openfoldpp/modules/ligand/__init__.py,sha256=C0zpiXCp9g1TqDPDwJZGmEcV2sa_SoRRRrhi5LEWIAU,1082
openfoldpp/modules/ligand/ligand_attention.py,sha256=bTzs4yFJdIYcGSS1u89DpeJPJ2WvC172ud2l8G8Aco4,25616
openfoldpp/modules/ligand/ligand_encoder.py,sha256=JSj8R8Hr2lGvADq9eFO89aWobUD2fm9BVJQSNDJj_Us,21104
openfoldpp/modules/ligand/ligand_utils.py,sha256=Fd6ScEaOyGJ7eLDDhmq9uqkYMWT0s9L10V9WBvdasg4,15227
openfoldpp/modules/mutation/__init__.py,sha256=MOqxzdjBbWcDWJrVNB_60x4TaUW_Wb7GZHvj6vpLwvw,565
openfoldpp/modules/mutation/ddg_predictor.py,sha256=9mOrwieOz_3y3YsoFw5QaMCXrYGkmetgcc1-Pxb5LBI,16569
openfoldpp/modules/mutation/mutation_scanner.py,sha256=xBh95kr23uFZCx72VS7haykMmLWnc8pPzJ26-IClriQ,15415
openfoldpp/modules/mutation/stability_predictor.py,sha256=rlNSKIgD6NJhPEFSp7hiEQ8sJ_ZSZnj4HwdV3u1JZ_M,13855
openfoldpp/modules/structure/fast_ipa.py,sha256=WLGht9DC5YIevBGg0pQwtqFEXNg8oAK8s9l63Mx8_fY,16717
openfoldpp/multimer/__init__.py,sha256=ze3wEklhAKngbot6c14CYGtaLwgd9rFfB4yoyG8yYSc,516
openfoldpp/multimer/attention_utils.py,sha256=lB2hV2MeuowSPZL7Gm88RbJKxQfsh_JMVZxQXXHgisg,13003
openfoldpp/multimer/chain_processing.py,sha256=TVql38hdUTbY8wEflLpGIdQYOgHAdQN6T88bWLgRF8g,12112
openfoldpp/multimer/multimer_runner.py,sha256=u_cekSGlG_kcS9VoF0Pl9ESUID3MbP1zrqzyva-3sMI,13781
openfoldpp/scripts/evaluation/casp_benchmark.py,sha256=95oRsZMspdlRvkkr4QfefUgxkfCUKG-8SbMcFnoi0y4,31126
openfoldpp/scripts/evaluation/confidence_benchmark.py,sha256=6WIqQH-vABbp0z1mXgmUOLu9u9uOJOnIiobLJqvnc8E,24209
openfoldpp/scripts/evaluation/esm_3b_benchmark.py,sha256=710SuCewbzxaGgWlc3N0HselZyGbS_-3mBSic-PfsGs,19019
openfoldpp/scripts/evaluation/evaluate_full_infrastructure.py,sha256=3N08_XfMQyhTaZzjKcXmAVtjlWI8pmDirGnU5PPtUi4,11960
openfoldpp/scripts/evaluation/evaluate_realistic_predictions.py,sha256=qMT1T1Kw75jSd1MxUfMl1iUA0vWtX-9gQaZui8PzruU,6787
openfoldpp/scripts/evaluation/evaluate_trained_openfold.py,sha256=dfUx1S4CZ-jppz5fSKDIMBubJFUemCTFVtHqqbb8-fE,10452
openfoldpp/scripts/evaluation/evaluate_working_openfold.py,sha256=jh1-n0xEpqJ16__ToPdmf_Cr85faQs5AOkbJm-mvzxg,10846
openfoldpp/scripts/evaluation/final_comprehensive_comparison.py,sha256=gENWOB3cvvAmGXVe_ni_jw6S7WDy3b3mrfjbJ04rEBs,8622
openfoldpp/scripts/evaluation/gpu_ci_benchmark.py,sha256=4-zh1dTCacADrtMSKJWM8NHq54pOWn5Io6yL30-4YVs,19586
openfoldpp/scripts/evaluation/hard_target_benchmark.py,sha256=dS3EfmrvuwSLEY0jYUdOCREmjSe-qfImPOnCX8tu4mw,19156
openfoldpp/scripts/evaluation/production_benchmark.py,sha256=uHwPLK5iuuWWCr2ts9IoaFm9RpuMbXoSJhUKQ-RmuzQ,24800
openfoldpp/scripts/evaluation/relaxation_benchmark.py,sha256=kcRRwSa4bmRq4KAWLpBRvpTutWaCTZfUXtTkMwthNGw,20899
openfoldpp/scripts/evaluation/simple_casp_benchmark.py,sha256=MRDyqCLRM3Ws9hG9oNJpXFJ-bPh-58F1yj0FQY_-030,15948
openfoldpp/scripts/evaluation/simple_sparse_benchmark.py,sha256=npFocKY9taPnldBZlf4CnNB1uOJw1d02GViOPIQ4U6A,12395
openfoldpp/scripts/evaluation/sparse_attention_benchmark.py,sha256=tfBcG6hyT4UoKIaka_foCyxEAs6mM49QV79ZuLxBOfA,18117
openfoldpp/scripts/legacy/add_metrics_simple.py,sha256=glC-Ov6k13yR763BlqRZ4d8cp2xswzxPRBK2tvKZLPM,4053
openfoldpp/scripts/legacy/add_structural_metrics.py,sha256=Lw5gsRjQLYqiS-tU12RDMcoNH_2uok8FqQ9tO8x4Zg4,10019
openfoldpp/scripts/legacy/benchmark_script.py,sha256=dHOOd7vwKB89QbWxyJFpRXi8LQpKQmJ15iGYSA5-5YU,7342
openfoldpp/scripts/legacy/calculate_metrics_final.py,sha256=j_a2fgAQ_E4xewJmIlOaQ_qp2HVqi5HwHAmBpcTchlY,8072
openfoldpp/scripts/legacy/complete_openfold_pipeline.py,sha256=1hMTTHofiV2jiZ26o9VuvhHeyMheDK3t5EIT_7w8CA4,17418
openfoldpp/scripts/legacy/comprehensive_comparison.py,sha256=OCpVNDvmtkXcQKZCLfwlx32lr19aTP-5Q_-RAT7uf0A,6809
openfoldpp/scripts/legacy/download_openfold_weights.py,sha256=e8i5j3GN6FfxLKtBsX4Q9GMHSiHu_tg59NnpHk0m4J0,7798
openfoldpp/scripts/legacy/download_real_weights.py,sha256=oeXqF_K30j5CIWZ3acVrVPaHm8dSqRa2GcP0SL0YNLw,10660
openfoldpp/scripts/legacy/enhanced_benchmark_script.py,sha256=bRs_TzQQYiuNOrvhJuTJg8t1FoRRTEGrDYHAmhqp5KQ,45798
openfoldpp/scripts/legacy/fix_structural_metrics.py,sha256=x6EjZs3mgrpb7YGyqd0gqd8gDzJ9pxwvmbgenVpskFg,9877
openfoldpp/scripts/legacy/full_infrastructure_pipeline.py,sha256=ZEUUuxVFgC8b98swoLCoKDYC1Z9J6R7RK1HMOzJjEPE,23481
openfoldpp/scripts/legacy/mock_openfold_server.py,sha256=YOv3J1zaB39IyVJ4YBzG6ud2ImcHOs9J6G3TP4xnKQw,6632
openfoldpp/scripts/legacy/openfold_plus_plus_completion_report.py,sha256=KvJYM6X6CVQscjhNeMXF_C5vpwuRIKDa-cxtEoggSBQ,9061
openfoldpp/scripts/legacy/quick_metrics_fix.py,sha256=L0TTEDiLrm1KvSGnETHBfaUGRNXkyKYtBaRkkXCX84I,4720
openfoldpp/scripts/legacy/quick_realistic_eval.py,sha256=eR5DrFsdKtZjwQxmG1jt8YQKygXo_dgVUP_F4L1-3p4,6682
openfoldpp/scripts/legacy/real_openfold_server.py,sha256=EI9mSsqO9bCjMlJja80o4da5bU02nvA7Bb_fJctruAM,13557
openfoldpp/scripts/legacy/run_casp_benchmark.py,sha256=bzeF64mVbb6_KgXzn0d2DRciqzo7gfnk4YJvnX9mKpc,8291
openfoldpp/scripts/legacy/run_pretrained_openfold.py,sha256=zhLHvzt-7GYX55J8-ps9S9KWEUoQhMns6eKrG17P1JU,19040
openfoldpp/scripts/legacy/run_real_predictions.py,sha256=f54vb3UejpBRVzxEE-Xj362F5dDxuNm96dPMoIckoGA,8729
openfoldpp/scripts/legacy/setup.py,sha256=yWbsjIiNH__5cJGgxHesuXWWQUmjo3NBeGVOlGyKLmY,4224
openfoldpp/scripts/legacy/start_openfold_server.py,sha256=vpc6NIBET024UJRJAUrgx6OmCy5YgArI8IXWYLHUUu4,11434
openfoldpp/scripts/legacy/thread_sequence.py,sha256=6EZF30UIsQbe2nAspq6Iwsx19P3ESVyeXT57yb0zVH4,6011
openfoldpp/scripts/legacy/train_openfold.py,sha256=Ql-3dOa6jBZw2JFJNd9vtcSmT_hqFzvU7O1vfNO28Mk,25396
openfoldpp/scripts/legacy/trained_openfold_pipeline.py,sha256=z7h5YD3XpuD3Flfun0XuSjkZ4urdg3n1SDwRiFOfNGg,15627
openfoldpp/scripts/legacy/working_openfold_pipeline.py,sha256=Tv6yRk2ZRdY_eVwDCBhJFdmeH27iTDK7LW0Uf1oM3Mw,14478
openfoldpp/src/openfoldpp/__init__.py,sha256=N3awRAlyQiT2PG1EARLpyZuffYKfEAldU1oP7xXI9Dw,275
openfoldpp/src/openfoldpp/models/__init__.py,sha256=0zWudgz91dh69NwglOs4ftn8dCDlgVsK8HxnEI7BR-Q,40
openfoldpp/src/openfoldpp/modules/__init__.py,sha256=VHMEyV-8r1T3HvaigSTaRrwPxmUA8InndHVTbY_gkG4,41
openfoldpp/src/openfoldpp/pipelines/__init__.py,sha256=Y_Hicm_UUHP_4lt62SYk_WrvBKRk-ArcO4LqeCMTD0o,307
openfoldpp/src/openfoldpp/pipelines/basic_pipeline.py,sha256=Tv6yRk2ZRdY_eVwDCBhJFdmeH27iTDK7LW0Uf1oM3Mw,14478
openfoldpp/src/openfoldpp/pipelines/complete_pipeline.py,sha256=ZEUUuxVFgC8b98swoLCoKDYC1Z9J6R7RK1HMOzJjEPE,23481
openfoldpp/src/openfoldpp/pipelines/trained_pipeline.py,sha256=z7h5YD3XpuD3Flfun0XuSjkZ4urdg3n1SDwRiFOfNGg,15627
openfoldpp/src/openfoldpp/utils/__init__.py,sha256=HQdrVmczcxQFv6TJhX1xSR5k2FNmNFitFEVhmjO-4HY,43
openfoldpp/tests/benchmarks/ultimate_comprehensive_benchmark.py,sha256=pabQEHDKLzucGIoEGEe4ET84d3DKQxMqOtG5JwTcuIA,18794
openfoldpp/tests/integration/test_cuda_triangle_kernels.py,sha256=Mv4Bk7N2_2c91_zWfmWOSkOxvK-iZmCcLHMGtJKual4,13487
openfoldpp/tests/integration/test_delta_prediction.py,sha256=N3lU4IYdQSEoPYabUj8fO_sSwvtPmF2j7a8n_mi7Dqk,12495
openfoldpp/tests/integration/test_enhanced_benchmark.py,sha256=68zlJtTAMcdjEqLjCSSyxyauAw49z05Q_Op7-SNCAr0,15401
openfoldpp/tests/integration/test_flash_attention_integration.py,sha256=HX7n59lfwKZtTPw2027ihCabkHP7RGX4GGZ2XshLxMo,10676
openfoldpp/tests/integration/test_gpu_memory_optimization.py,sha256=Fh9Tpq3jNrdijMMgv9Whkd0WucXTQcWDaGoX2V-oSho,14728
openfoldpp/tests/integration/test_language_model_embeddings.py,sha256=b5dUNZqasDWZih3UvsuOSc7kSPTvZw1u_bCKaaWwjr4,11374
openfoldpp/tests/integration/test_ligand_aware_folding.py,sha256=xUlrZrmEjIEW-yBxINR-N7DglHvvpbSMxWubVhV_cII,11296
openfoldpp/tests/integration/test_ligand_parsing.py,sha256=TPMROJKVQTd0Ce5OjKRmAw7wESP_b9C17e6q-_dYNmQ,7682
openfoldpp/tests/integration/test_md_refinement.py,sha256=MhF1hlXPYVNrpm9WfKGhqSoWt01k20zxUstrOr7ptQo,15513
openfoldpp/tests/integration/test_mmseqs2_integration.py,sha256=OgotyL5KBdNV5U_mvWGMWFeA0pZUFSwR-aorD7rjiqQ,15464
openfoldpp/tests/integration/test_multimer_attention_contact_loss.py,sha256=kQxuGbYHU8urrXft-avQHnE3mgrY9xfgcvdsjZuRH9I,6853
openfoldpp/tests/integration/test_multimer_support.py,sha256=c8s_PzXBPwMUiAgCgnCWoDrLhH9bP0jf5uS9QANiHK8,4760
openfoldpp/tests/integration/test_mutation_refinement.py,sha256=thnz_3i5X-sze1KQRdF9nSmplgVQFPMBLemNO2wfRe0,14720
openfoldpp/tests/integration/test_optimized_mutation_server.py,sha256=VK4tTfuZriVPCZuCaWSUxeMhVcOqGvVU_OrAiEGrwqo,14557
openfoldpp/tests/integration/test_pybind11_interface.py,sha256=TDwuG3sgZfNREhp3ZRmzYWZ5-yyjxz7AZmMciQMsrZI,14723
openfoldpp/tests/integration/test_quantization_checkpointing.py,sha256=-9YhQZ519OET-f_51kYtIRWPCLd8c3AYyZ5OAftZyLM,13500
openfoldpp/tests/integration/test_websocket_server.py,sha256=pEpc_aapPHUmwzvm32HdR2NLRS-0-FAZl6bh3-iNw6w,16002
runpod/execute_runpod_benchmark.py,sha256=e0kVj9M364MAQuOc-3IpJ2Mw6teco4zKz31O-sMdrkg,5863
runpod/runpod_benchmark_client.py,sha256=Zq5aqAg7tfabgWMyH_DIqqTGLjSS2ClJjLtj-dFwuP4,13567
runpod/runpod_production_benchmark.py,sha256=-ePihRPMgfsX4L-WuCtzX3wYSHJE7-qXAfgF8pjYFB8,12258
runpod/runpod_server.py,sha256=SA7mcGTdBPh1_lZeH5ndJDQMlGg6WQzkdml0eF56kPM,8655
runpod/runpod_setup.py,sha256=nYzQFinv_RMbVKIdWalIkTHAelpWmU35ocuw-PHdWL4,2716
runpod/test_runpod_connection.py,sha256=NeWGA1XTGLU6pI-4crMcgebwu8GjkusRxy5p-u31nXc,7126
scripts/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
scripts/alignment_data_to_fasta.py,sha256=M0q2vhww5mYkEBG4rtEd27OYaWvpxhL36_ocsO-2C14,4125
scripts/build_deepspeed_config.py,sha256=xAHBgl-QAolLCm3DAy8R73fQQYSRtAU9gdWCtBt-7eo,12067
scripts/convert_of_weights_to_jax.py,sha256=GBSm75a3N_rtEAmB1LS-VcemC6AmpcG5IK-GhWDgslQ,3574
scripts/convert_v1_to_v2_weights.py,sha256=2Nbzq0CDbWdb4gEIQCvog7XluYjUCs_hVJzBB977NlI,3680
scripts/data_dir_to_fasta.py,sha256=gZUsIF3N20cC2X9MziRt-GIOV4mekn2iTrBeT7vPY9E,2913
scripts/deepspeed_inference_test.py,sha256=Ie0vjLWkg5rQfTX1p9TiMZuhdq6jSLMkOERiaZppZ7c,1186
scripts/download_cameo.py,sha256=LcZXnZ23TU6NAVtY4Uwq77ZgYcC-zg5Y1kA1XKZa7aQ,2794
scripts/expand_alignment_duplicates.py,sha256=LGf5Dnj-JMiq79raiQXKq_2MrphA3lFOZpCTAbGncS4,2949
scripts/fasta_to_clusterfile.py,sha256=sfPSY0mizHiwvsvWHb0MYKFHXsP2PIDJ6ki9sGE-bZA,3153
scripts/generate_alphafold_feature_dict.py,sha256=EHk_KtjqBJ7PvJ3gSq2bqDA3kll0ryNkN_b9_k7OB3s,2786
scripts/generate_chain_data_cache.py,sha256=53s0bRHNRAaZo7QWLR4IPHgvMqwYZC0eXxV88jWgdr4,4568
scripts/generate_mmcif_cache.py,sha256=eLAyvBOBG7QJrPcOfchBPgBqRUdqJxLHWKHIsudKDsI,3331
scripts/precompute_alignments.py,sha256=IbUW-PXS0oi3-n2o7Iq-sXuir5qS8eSE9O1QT-vA_74,9154
scripts/precompute_alignments_mmseqs.py,sha256=_IbI0H8YT7Xu1L2LeF5X9iKWFyyKE9aMQ6De2WyLf-4,5216
scripts/precompute_embeddings.py,sha256=fqjat9_IGHMgaCuqYIqXHuHeQomIQo32IT1y7UPrHkA,6456
scripts/prep_proteinnet_msas.py,sha256=R5J4bPQnc1qlxoqRKOGI772eW0PH7uVu1tJcNawEUQw,1943
scripts/unpack_proteinnet.py,sha256=SrLyj8n393-6Fd2dxzNRQYYCIl3oSnWoIX-Ul9wHlu4,1181
scripts/utils.py,sha256=EIWG4ALlNm7gI7QXFQCh9xzzLt1fmh1hYW-oRPP2uwU,4015
scripts/alignment_db_scripts/add_non_unique_to_alignment_db.py,sha256=06mr2zMrtuOkuf0GP3aMHB5U3l_6heQC5768bgTnGb0,2603
scripts/alignment_db_scripts/create_alignment_db.py,sha256=NWKKSTg5-Wzi6HRNaVWpbt-uSs6JSrFAfE1Z_5PWc9I,1319
scripts/alignment_db_scripts/create_alignment_db_sharded.py,sha256=VY7_J0meXFg3me0wpTc_N1d3Sy8zYtIIFZbKcVVwPHQ,7974
scripts/alignment_db_scripts/unify_alignment_db_indices.py,sha256=-gmxVqKZr34H7sTtCsmstQM751fIPT5eNZNRrKkbRpo,991
scripts/docker/test_api.py,sha256=7LM32wEpx0XJu4lRFL1fe2t4MxWerh5RTkNwoUXP34Y,2756
scripts/evaluation/casp_validation.py,sha256=997bXKUiVpEqdPx378GhKCjv6vtYkL-L7wTb2A-N6GA,20515
scripts/evaluation/distillation_report.py,sha256=t-tkiBpJrVO1tqL4Vg57w_4xN-CIemjL0X5TvYyrVu0,18850
scripts/evaluation/gpu_ci_benchmark.py,sha256=3uJ8MW_oP_FMTymcEG78M_th_ekM9-LTeZEqkvuSjzo,18196
scripts/evaluation/phase_d_benchmark.py,sha256=EZptHU6mpKNpAffGoe1d5eDVeioTTNu6yDAEKgc53eA,18336
scripts/evaluation/quick_phase_b_benchmark.py,sha256=D9_L76Fr3PD1YJ8iAYPIQr_4pr8xhcAOiGAs51kafJ0,8724
scripts/evaluation/quick_phase_d_benchmark.py,sha256=lRH3KjdR0NbCXjmcZSBLzHnQLe_XlwqjVsNAOR_azZA,11509
scripts/evaluation/run_phase_b_benchmark.py,sha256=jomkhquVP0YpohOGIeLKX8AT-uN6rvb9bH8RH2n29t4,16198
scripts/evaluation/run_plm_benchmark.py,sha256=xkI17cP6QQ9_O2_RwQQfIgKv8ECFDgTj6CnjMTA_1-k,6133
scripts/local/validate_optimizations.py,sha256=F6XH2wgyPjbGSqvU2p68ZI6pMcIf4qhCbWuULWe2asA,22881
scripts/training/train_distill.py,sha256=r8TR1bLkH1EWWW_ZsSeD6sMSWMkOWKd4L3Qb4jweiyc,20054
src/openfoldpp/cli/confidence_command.py,sha256=kjFp9lK4DqLfu6ISVHz_JbNmseRhL2swMY347gRSExM,14524
src/openfoldpp/cli/relax_command.py,sha256=oWUwmIb8Gw_Nce9FD5mqkxw83nA4LxlIg6GML7ZQwk0,8973
src/openfoldpp/configs/slim_evoformer_config.py,sha256=HtTQIUoE43781Lplk77jajgCJj6gBu4vmzNIDwtxNzM,9833
src/openfoldpp/losses/distillation_loss.py,sha256=Ju2mNQekGZuW-5dPg_300GDnyHNkyThJyFTmIDm7kFw,19315
src/openfoldpp/models/esm_3b_quantized.py,sha256=W1ySaZS9ZI8F8e9yqdzShdQv4QrCdwReMNnKPv2VmcU,14007
src/openfoldpp/models/esm_quantization.py,sha256=zBAg6XiLLx-MOi9xfSmLrPb58twWbc1s-uwp5hNp57E,14670
src/openfoldpp/models/esm_wrapper.py,sha256=IT_2v4FEmbVMCV2IiXjsItCQr-8GahAGgZfcNo5fnS8,9947
src/openfoldpp/modules/confidence_head.py,sha256=GwE5BK-MZmvf7Fmc-xQN7dzjLQLeY_nWTkKRWnM1IFQ,14843
src/openfoldpp/modules/diffusion_refiner.py,sha256=2j6pZf02jDz41ENTUmXvnlvaSpD-A6naqoUWuOjez_g,17192
src/openfoldpp/modules/enhanced_plm_projection.py,sha256=aThU5wO0NRD-MdNWSOPQjzya3-MvaH6JG-Rc0tu4V9E,13573
src/openfoldpp/modules/lora_adapters.py,sha256=WDjBku50vZTjpgKDmiuD-wmDJfB-xykbUf__ILyupxM,17342
src/openfoldpp/modules/plm_projection.py,sha256=eoGSXsHifqh5ELpHHgSjDuSRAD1SUYo7014urHi4FdA,12048
src/openfoldpp/modules/slim_evoformer.py,sha256=IIBLe-Tgu-_ZvSD0Tf70SlnWdAR06Uc3rj8eomdmJrI,15895
src/openfoldpp/modules/sparse_attention.py,sha256=IUxkT6rr-Z56C8bbRv2aEElcJys0etvMU6VEM2lEAOo,16247
src/openfoldpp/modules/sparse_evoformer.py,sha256=EdrPGnDYaC4sS9oGZLJqiK41yHAMDoIUEXVA3k0wugA,13811
src/openfoldpp/pipelines/complete_pipeline.py,sha256=tA0aHDojzA77oB8_yHDFV7Sfp7C5lBhbaNt7Jb8nUBE,14605
src/openfoldpp/relaxation/fast_relaxation.py,sha256=ovGsKB79frC8JI6y0hKHd9aEDMDt4u3qwz7tc33RYXo,16518
src/openfoldpp/training/hard_target_finetuning.py,sha256=sBq5YkMjZz4ViP6X_PCviDyKd-Phu-t7ITXsv35vRrU,22275
src/openfoldpp/utils/quantization.py,sha256=SkvKCFak6fCqRmxWMbPGiTpLPHpVDY05hxG9RsNN6Kw,15527
src/openfoldpp/utils/teacher_transfer.py,sha256=9T2EDQ8xLLPlICbX_o19jz1VU6tsBdkr3-xK2J5L9Ug,15198
tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
tests/compare_utils.py,sha256=50U6HRkOSrjUhrZK1X0NVDEmqgj7B2G48ifZhiXYMfc,4363
tests/config.py,sha256=ZbRjZIAGv3Hu6FQ7-d_ee_-lTqHXL8z68-KVqiLlR9g,1831
tests/data_utils.py,sha256=H1TOqwVmuPY7Yck_upuIlbiY74_yzI-k6yzQMwe0jOQ,4684
tests/test_confidence.py,sha256=eeWUbnc9qUU6KR4qAWKn-JL7W8XRxlnmouNYkh_8Bic,16550
tests/test_cpp_engine.py,sha256=ZoCVCZjwznUpnzg5HOUZj2clwHTicL8VQZ043k5GdKU,13286
tests/test_data_pipeline.py,sha256=0_Xne05ctqXhwQHjlCoq6UbZfA1G7to5nyfxEJzOeVY,4316
tests/test_data_transforms.py,sha256=p-sDz9cIqOsOSm7iDFZVKBTFhGaM76ssF34rJsQI2mc,10455
tests/test_deepspeed_evo_attention.py,sha256=Hy3VZ9dp7peaaqh6ViLsmM7wDQwMPNmVgEJ_WVnBr5c,13541
tests/test_docking.py,sha256=_O0Tn_Yfx1M9WgdCZLEUq7N5xKE5z4DCKGEQOeKKXVs,11726
tests/test_embedders.py,sha256=CWftDvdSmTtLZS4ygdbItD3p-muiGORgW-VbaWj8M0Y,4584
tests/test_evoformer.py,sha256=m5KpCdSMACJdFi2Gf6Ou8_S_yDRfpMrWxZIzZRFOJ6E,11353
tests/test_fast_ipa.py,sha256=kHAMLDhcJRrvp8iLuCTyaUN9qyWEbnWX5LanXmkIHjA,14540
tests/test_feats.py,sha256=rWwFErP9op2ZnZo568ebLPPBiZBKnu7M98NWZ-3VM1c,14331
tests/test_flash_triangle_attention.py,sha256=dRyBtPInw8jFO8scbaro03Yk6acRDK4wm3zyc02Zsn4,13327
tests/test_fused_triangle_multiplication.py,sha256=phhWLl2MC1FcLIEnCcNfF5kUHR_GvH6ILvKzDPFRPjM,14427
tests/test_import_weights.py,sha256=OQ2uJ04BhPLOeZdhehhkokbkVZWMNOo0zGq04-MOxLo,3108
tests/test_kernels.py,sha256=IXoKPnjbnzp17bNTu8U7xYETfKLX4oYrdVvifshI6bw,2550
tests/test_ligand.py,sha256=APIVNBM5txMG3prNfc7FGsPSzC55HURdh_FpyIIXaCM,12622
tests/test_ligand_aware_folding.py,sha256=aTC5bp7yDlla3hNQqCMuYwVKOK71UlRPWzAsQPXIKIw,16861
tests/test_loss.py,sha256=wYamsGL3JQ1gLZZQKPe5_4JJeOA-eqTbVwHlBlZOGlY,40456
tests/test_model.py,sha256=0KexZDDiTAafwMNtAmd_Nbl8zqhNhN51g15PHlFGyXE,7992
tests/test_msa.py,sha256=inihvCslqe_aSan6p8y8eHt-d98pxpNtFWdd9F247cc,7878
tests/test_multimer.py,sha256=t0rO63aSEzQTpYDYqmXkS6RhBIRZqcOz37-B42Zhij4,11613
tests/test_multimer_datamodule.py,sha256=Wez8W77OfY97k2K4WkELcqFSFHaN_yKDocI84dPz61g,3827
tests/test_mutation_prediction.py,sha256=96S_fqFJSpW59jXfHkNIWMzFi8l90eu8K9ONmGcKwY4,14997
tests/test_mutation_scanning.py,sha256=axo9yrp9sG6ssnZkJWgZQBTx9b_fGXCKM1ffPFMCUfI,11302
tests/test_mutation_scanning_simple.py,sha256=6ljF-bStQN3NhSijZ2gdVBlpZ2Qmbdaek9JSI1cDaHc,11708
tests/test_outer_product_mean.py,sha256=IMMClPcbzfC9_YumMudeZtfaDGcTIhC9mRIZCa510sc,3341
tests/test_pair_transition.py,sha256=J1OvO-12bWDmePiCpHBf58DMXHkqDiaxER-nLVg4fuc,3180
tests/test_permutation.py,sha256=EHGn9TGNHlaSgqip8xo-hQtJGthm6-EhvEtkbAL7CsQ,12762
tests/test_primitives.py,sha256=_NjlI3_TGI1IR_AMaGuyGW3CV_oa9eZYoXuNWzX4fK8,1750
tests/test_structure_module.py,sha256=oEe5MXTjZzAyeCSnl2CoWMYVoKe-RWEtX0MyNzZevFE,11439
tests/test_template.py,sha256=HHYLrVoH5368I0BTgDVekvRyqCkoa7Ih7rEhP0lkNac,10747
tests/test_triangular_attention.py,sha256=wyWB8huT58Sw0TzP0EI023veuGgo9F_OFy-XXKgH1Bg,3910
tests/test_triangular_multiplicative_update.py,sha256=ZDboliTXhf4hQ_Nfmr5-x9rKXB5talvH8A_OrdiNc88,5296
tests/test_utils.py,sha256=v6luC_M2NOwvHDiSYQqo9D4QdU_MMYBAoxIjmgHfHPI,7748
tests/test_wasm_build.py,sha256=8sVBZ7HEDqJDixk4i_eNgHBSl5oMPv0GdCWacxBgqtU,17487
tests/benchmarks/test_plm_accuracy.py,sha256=2vo9LO_NxVqrXq8qcY1I9WnYwRFdbjqwBXJnoEwnSYA,8675
wasm_build/serve_demo.py,sha256=gHGDyz_pwyOtbuaUmGklfDwMsK2N3wIWRTqlJRrQ4wg,2077
wasm_build/scripts/quantize_for_wasm.py,sha256=hrTqRm2dgHjlMoJLamfTIy9unHmCD9LOkezF94WIFm0,14748
web_backend/mutation_server.py,sha256=i7qBm_oBV0wp80Em9W6a3MiQJxechJ0qEkLx1rBMwBI,14939
odinfold-1.0.0a8.dist-info/METADATA,sha256=wZonyToTrZeSQwjGGDrspeTie16VYapa-PXCISH9EwY,9431
odinfold-1.0.0a8.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
odinfold-1.0.0a8.dist-info/top_level.txt,sha256=5p3ZU7dufJ_IdlWGNN8sRViKxr9b1scaRRtYwMK0rCg,105
odinfold-1.0.0a8.dist-info/RECORD,,
