LICENSE.md
MANIFEST.in
README.md
environment-dev.yml
environment.yml
pyproject.toml
oceantracker/__init__.py
oceantracker/definitions.py
oceantracker/main.py
oceantracker/oceantracker_params_runner.py
oceantracker/run_ot_cmd_line.py
oceantracker/shared_info.py
oceantracker.egg-info/PKG-INFO
oceantracker.egg-info/SOURCES.txt
oceantracker.egg-info/dependency_links.txt
oceantracker.egg-info/entry_points.txt
oceantracker.egg-info/requires.txt
oceantracker.egg-info/top_level.txt
oceantracker/dispersion/__init__.py
oceantracker/dispersion/_base_dispersion.py
oceantracker/dispersion/random_walk.py
oceantracker/event_loggers/__init__.py
oceantracker/event_loggers/_base_event_loggers.py
oceantracker/event_loggers/log_polygon_entry_and_exit.py
oceantracker/field_group_manager/__init__.py
oceantracker/field_group_manager/dev_nested_grids_field_group_manager.py
oceantracker/field_group_manager/field_group_manager.py
oceantracker/field_group_manager/setup_reader.py
oceantracker/field_group_manager/dev/__init__.py
oceantracker/field_group_manager/dev/_dev_parallel_reader.py
oceantracker/field_group_manager/util/__init__.py
oceantracker/field_group_manager/util/field_group_manager_util.py
oceantracker/fields/__init__.py
oceantracker/fields/_base_field.py
oceantracker/fields/field_vertical_gradient.py
oceantracker/fields/friction_velocity.py
oceantracker/fields/reader_field.py
oceantracker/fields/total_water_depth.py
oceantracker/fields/util/__init__.py
oceantracker/integrated_model/__init__.py
oceantracker/integrated_model/_base_model.py
oceantracker/integrated_model/lagraingian_structures_FTLE_2D.py
oceantracker/interpolator/__init__.py
oceantracker/interpolator/_base_interp.py
oceantracker/interpolator/_eval_interp_triangles.py
oceantracker/interpolator/_find_hori_cell_triangle_walk.py
oceantracker/interpolator/_find_vertical_cell_classes.py
oceantracker/interpolator/interp_triangle_native_grid.py
oceantracker/interpolator/depricated/__init__.py
oceantracker/interpolator/dev/__init__.py
oceantracker/interpolator/util/__init__.py
oceantracker/interpolator/util/find_initial_cell.py
oceantracker/interpolator/util/interp_kernals.py
oceantracker/interpolator/util/triangle_eval_interp.py
oceantracker/interpolator/util/triangle_interpolator_util.py
oceantracker/interpolator/util/depricated/__init__.py
oceantracker/interpolator/util/dev/__init__.py
oceantracker/particle_group_manager/__init__.py
oceantracker/particle_group_manager/particle_group_manager.py
oceantracker/particle_group_manager/util/__init__.py
oceantracker/particle_group_manager/util/pgm_util.py
oceantracker/particle_properties/__init__.py
oceantracker/particle_properties/_base_particle_properties.py
oceantracker/particle_properties/age_decay.py
oceantracker/particle_properties/distance_travelled.py
oceantracker/particle_properties/fractional_water_depth.py
oceantracker/particle_properties/inside_polygons.py
oceantracker/particle_properties/load_carrying.py
oceantracker/particle_properties/particle_operations.py
oceantracker/particle_properties/particle_parameter_from_normal_distribution.py
oceantracker/particle_properties/rouse_number.py
oceantracker/particle_properties/total_water_depth.py
oceantracker/particle_properties/vector_magnitude.py
oceantracker/particle_properties/water_speed.py
oceantracker/particle_properties/dev/__init__.py
oceantracker/particle_properties/dev/eDNAdetectionBackwards.py
oceantracker/particle_properties/util/__init__.py
oceantracker/particle_properties/util/particle_comparisons_util.py
oceantracker/particle_properties/util/particle_operations_util.py
oceantracker/particle_statistics/__init__.py
oceantracker/particle_statistics/_base_location_stats.py
oceantracker/particle_statistics/_base_stats_variants.py
oceantracker/particle_statistics/gridded_statistics2D.py
oceantracker/particle_statistics/gridded_statistics3D.py
oceantracker/particle_statistics/polygon_statistics.py
oceantracker/particle_statistics/dev/__init__.py
oceantracker/particle_statistics/dev/resident_in_polygon.py
oceantracker/particle_statistics/util/__init__.py
oceantracker/particle_statistics/util/stats_util.py
oceantracker/plot_output/__init__.py
oceantracker/plot_output/plot_statistics.py
oceantracker/plot_output/plot_tracks.py
oceantracker/plot_output/plot_utilities.py
oceantracker/preprocessing/__init__.py
oceantracker/preprocessing/hindcast_scale_offset_compress.py
oceantracker/read_output/__init__.py
oceantracker/read_output/python/__init__.py
oceantracker/read_output/python/convert_compact_tracks_to_rect.py
oceantracker/read_output/python/load_output_files.py
oceantracker/read_output/python/read_ncdf_output_files.py
oceantracker/read_output/python/util/__init__.py
oceantracker/read_output/python/util/read_compact_tracks_file.py
oceantracker/read_output/python/util/read_rectangular_tracks_file.py
oceantracker/reader/DELFT3DFM_reader.py
oceantracker/reader/FVCOM_reader.py
oceantracker/reader/GLORYS_reader.py
oceantracker/reader/ROMS_reader.py
oceantracker/reader/ROMS_reader_moana_projectNZ.py
oceantracker/reader/SCHISM_reader.py
oceantracker/reader/SCHISM_reader_v5.py
oceantracker/reader/__init__.py
oceantracker/reader/_base_all_readers.py
oceantracker/reader/_base_structured_reader.py
oceantracker/reader/_base_unstructured_reader.py
oceantracker/reader/_oceantracker_dataset.py
oceantracker/reader/dev_generic_reader.py
oceantracker/reader/depricated/__init__.py
oceantracker/reader/dev/__init__.py
oceantracker/reader/dev/dev_remy_tidecon.py
oceantracker/reader/util/__init__.py
oceantracker/reader/util/dev_convert_new_schism_format.py
oceantracker/reader/util/dev_thredds_server_util.py
oceantracker/reader/util/get_hydro_model_info.py
oceantracker/reader/util/hydromodel_grid_transforms.py
oceantracker/reader/util/reader_util.py
oceantracker/release_groups/__init__.py
oceantracker/release_groups/_base_release_group.py
oceantracker/release_groups/downstream_point_release.py
oceantracker/release_groups/grid_release.py
oceantracker/release_groups/point_release.py
oceantracker/release_groups/polygon_release.py
oceantracker/release_groups/radius_release.py
oceantracker/resuspension/__init__.py
oceantracker/resuspension/_base_resuspension.py
oceantracker/resuspension/basic_resuspension.py
oceantracker/resuspension/resuspension.py
oceantracker/resuspension/depricated/__init__.py
oceantracker/resuspension/depricated/resuspension_using_bottom_stress.py
oceantracker/solver/__init__.py
oceantracker/solver/solver.py
oceantracker/solver/util/__init__.py
oceantracker/solver/util/dev_triangle_kernnal_solver.py
oceantracker/solver/util/solver_util.py
oceantracker/tidal_stranding/__init__.py
oceantracker/tidal_stranding/tidal_stranding.py
oceantracker/time_varying_info/__init__.py
oceantracker/time_varying_info/_base_time_varying_info.py
oceantracker/tracks_writer/__init__.py
oceantracker/tracks_writer/_base_tracks_writer.py
oceantracker/tracks_writer/track_writer_compact.py
oceantracker/tracks_writer/deprecated/__init__.py
oceantracker/tracks_writer/deprecated/track_writer_retangular.py
oceantracker/tracks_writer/old/__init__.py
oceantracker/trajectory_modifiers/__init__.py
oceantracker/trajectory_modifiers/_base_trajectory_modifers.py
oceantracker/trajectory_modifiers/cull_particles.py
oceantracker/trajectory_modifiers/cull_rate.py
oceantracker/trajectory_modifiers/settle_in_polygon.py
oceantracker/trajectory_modifiers/split_particles.py
oceantracker/trajectory_modifiers/surface_float.py
oceantracker/util/__init__.py
oceantracker/util/__root_parameter_base_class__.py
oceantracker/util/basic_util.py
oceantracker/util/class_importer_util.py
oceantracker/util/cord_transforms.py
oceantracker/util/debug_util.py
oceantracker/util/dev_shared_memory_util.py
oceantracker/util/download_data.py
oceantracker/util/geometry.py
oceantracker/util/get_versions_computer_info.py
oceantracker/util/json_util.py
oceantracker/util/message_logger.py
oceantracker/util/ncdf_util.py
oceantracker/util/numba_util.py
oceantracker/util/numpy_util.py
oceantracker/util/output_util.py
oceantracker/util/parameter_base_class.py
oceantracker/util/parameter_checking.py
oceantracker/util/polygon_util.py
oceantracker/util/polygon_util_ystrips.py
oceantracker/util/profiling_util.py
oceantracker/util/read_geometry.py
oceantracker/util/read_points_polygons.py
oceantracker/util/regular_grid_util.py
oceantracker/util/save_state_util.py
oceantracker/util/scheduler.py
oceantracker/util/setup_util.py
oceantracker/util/status_util.py
oceantracker/util/time_util.py
oceantracker/util/triangle_utilities.py
oceantracker/util/yaml_util.py
oceantracker/util/dev/OTreRunner.py
oceantracker/util/dev/__init__.py
oceantracker/util/dev/dev_inside_polygon_within_grid.py
oceantracker/util/dev/dev_random_points_in_polygon.py
oceantracker/velocity_modifiers/__init__.py
oceantracker/velocity_modifiers/_base_velocity_modifer.py
oceantracker/velocity_modifiers/terminal_velocity.py
tests/test_reader_formats.py
tutorials_how_to/A_minimal_example.ipynb
tutorials_how_to/B_running_with_helper_class.ipynb
tutorials_how_to/C_release_groups.ipynb
tutorials_how_to/D_output_files.ipynb
tutorials_how_to/E_run_using_parameter_dictionaries.ipynb
tutorials_how_to/G_onthefly_statistics.ipynb
tutorials_how_to/H_add_user_written_class.ipynb
tutorials_how_to/__init__.py
tutorials_how_to/my_part_prop.py
tutorials_how_to/demo_hindcast/make_demo_roms_hindcast.py
tutorials_how_to/demo_hindcast/make_demo_schism_hindcast.py