LICENSE.md
MANIFEST.in
README.md
setup.py
dev/__init__.py
dev/dev_template.py
dev/benchmark_timings/__init__.py
dev/benchmark_timings/benchmark_computer.py
dev/bug_hunting/__init__.py
dev/bug_hunting/reproduce_bug.py
dev/bug_hunting/Debugg_codes/Connectivity_between_farms_RV.py
dev/bug_hunting/Debugg_codes/__init__.py
dev/check_code/__init__.py
dev/check_code/check_functions.py
dev/dev_testing/__init__.py
dev/dev_testing/dev_merge_nested_grids.py
dev/dev_testing/run_dev_version.py
dev/dev_testing/mockups/__init__.py
dev/dev_testing/mockups/async_reader_mockup.py
dev/dev_testing/mockups/checkpoint_mockup.py
dev/dev_testing/mockups/type_dict.py
dev/dev_testing/mockups/webApps/__init__.py
dev/dev_testing/mockups/webApps/onlineTool_eDA.py
dev/dev_testing/mockups/webApps/onlineTool_oceanPlastics.py
dev/dev_testing/scratch_tests/AOSnumba_speed.py
dev/dev_testing/scratch_tests/__init__.py
dev/dev_testing/scratch_tests/fastmath_tests.py
dev/dev_testing/scratch_tests/mask_verses_sel.py
dev/dev_testing/scratch_tests/masking_branchless.py
dev/dev_testing/scratch_tests/multiproc_approach_speed.py
dev/dev_testing/scratch_tests/numba_dim_choice.py
dev/dev_testing/scratch_tests/numba_function_dispatch_speed.py
dev/dev_testing/scratch_tests/run_dev_version.py
dev/dev_testing/scratch_tests/slots.py
dev/dev_testing/scratch_tests/slots_speed.py
dev/dev_testing/scratch_tests/speed_range_index.py
dev/dev_testing/scratch_tests/vertical_search_speed.py
dev/dev_testing/scratch_tests/branchless_code/__init__.py
dev/dev_testing/scratch_tests/branchless_code/branchless_div_zero.py
dev/dev_testing/scratch_tests/branchless_code/branchless_max_choice.py
dev/dev_testing/scratch_tests/branchless_code/branchless_val_choice.py
dev/dev_testing/scratch_tests/old/NumbaNestedCallls.py
dev/dev_testing/scratch_tests/old/__init__.py
dev/dev_testing/scratch_tests/old/indexingSpeed_sorted_true_not_true.py
dev/dev_testing/scratch_tests/old/interp_by_tri_3Dvectors.py
dev/dev_testing/scratch_tests/old/interp_by_tri_nodes.py
dev/dev_testing/scratch_tests/old/interp_eval_kernal.py
dev/dev_testing/scratch_tests/old/numba_custom_dtype.py
dev/dev_testing/scratch_tests/old/numba_dict_to__struct_or_class.py
dev/dev_testing/scratch_tests/old/numpy_compound_dtype.py
dev/dev_testing/scratch_tests/old/speed_array_of_struct.py
dev/dev_testing/scratch_tests/old/speed_array_of_struct_threads.py
dev/dev_testing/scratch_tests/old/threading_cost_estimateV3.py
dev/dev_testing/scratch_tests/simd/__init__.py
dev/dev_testing/scratch_tests/simd/simd_test1.py
dev/dev_testing/scratch_tests/simd/simd_test2.py
dev/dev_testing/scratch_tests/simd/simd_test3_innerloop.py
dev/dev_testing/scratch_tests/xarray/__init__.py
dev/dev_testing/scratch_tests/xarray/xarray_multi_file.py
dev/dev_testing/scratch_tests/xarray/xarray_speed.py
dev/misc/__init__.py
dev/misc/paper_figure2024.py
dev/misc/paper_figure2024_appendix.py
dev/misc/test_HG.py
dev/misc/test_NZnational.py
dev/misc/test_NZports.py
dev/misc/test_WHOI.py
dev/misc/test_sounds.py
dev/preprocessing/__init__.py
dev/preprocessing/compress_hindcast.py
dev/reader_checks/__init__.py
dev/reader_checks/sea_spurgev01.py
dev/util/__init__.py
dev/util/scale_offset_hindcast.py
docs/__init__.py
docs/build_parameter_ref.py
docs/conf.py
docs/gatherDefaultParams.py
installing/__init__.py
oceantracker/__init__.py
oceantracker/_oceantracker_case_runner.py
oceantracker/_oceantracker_main_runner.py
oceantracker/definitions.py
oceantracker/main.py
oceantracker/run_ot_cmd_line.py
oceantracker/shared_info.py
oceantracker.egg-info/PKG-INFO
oceantracker.egg-info/SOURCES.txt
oceantracker.egg-info/dependency_links.txt
oceantracker.egg-info/requires.txt
oceantracker.egg-info/top_level.txt
oceantracker/dispersion/__init__.py
oceantracker/dispersion/_base_dispersion.py
oceantracker/dispersion/random_walk.py
oceantracker/event_loggers/__init__.py
oceantracker/event_loggers/_base_event_loggers.py
oceantracker/event_loggers/log_polygon_entry_and_exit.py
oceantracker/field_group_manager/__init__.py
oceantracker/field_group_manager/dev_nested_grids_field_group_manager.py
oceantracker/field_group_manager/field_group_manager.py
oceantracker/field_group_manager/util/__init__.py
oceantracker/field_group_manager/util/field_group_manager_util.py
oceantracker/fields/__init__.py
oceantracker/fields/_base_field.py
oceantracker/fields/field_vertical_gradient.py
oceantracker/fields/friction_velocity.py
oceantracker/fields/reader_field.py
oceantracker/fields/total_water_depth.py
oceantracker/fields/util/__init__.py
oceantracker/integrated_model/__init__.py
oceantracker/integrated_model/_base_model.py
oceantracker/integrated_model/lagraingian_structures_FTLE_2D.py
oceantracker/interpolator/__init__.py
oceantracker/interpolator/_base_interp.py
oceantracker/interpolator/_eval_interp_triangles.py
oceantracker/interpolator/_find_hori_cell_triangle_walk.py
oceantracker/interpolator/_find_vertical_cell_classes.py
oceantracker/interpolator/interp_triangle_native_grid.py
oceantracker/interpolator/depricated/__init__.py
oceantracker/interpolator/dev/__init__.py
oceantracker/interpolator/util/__init__.py
oceantracker/interpolator/util/interp_kernals.py
oceantracker/interpolator/util/triangle_eval_interp.py
oceantracker/interpolator/util/triangle_interpolator_util.py
oceantracker/interpolator/util/depricated/__init__.py
oceantracker/interpolator/util/dev/__init__.py
oceantracker/particle_concentrations/__init__.py
oceantracker/particle_concentrations/_base_user_triangle_properties.py
oceantracker/particle_concentrations/particle_concentrations.py
oceantracker/particle_group_manager/__init__.py
oceantracker/particle_group_manager/particle_group_manager.py
oceantracker/particle_group_manager/util/__init__.py
oceantracker/particle_group_manager/util/pgm_util.py
oceantracker/particle_properties/__init__.py
oceantracker/particle_properties/_base_particle_properties.py
oceantracker/particle_properties/age_decay.py
oceantracker/particle_properties/distance_travelled.py
oceantracker/particle_properties/inside_polygons.py
oceantracker/particle_properties/load_carrying.py
oceantracker/particle_properties/particle_operations.py
oceantracker/particle_properties/particle_parameter_from_normal_distribution.py
oceantracker/particle_properties/total_water_depth.py
oceantracker/particle_properties/water_speed.py
oceantracker/particle_properties/dev/__init__.py
oceantracker/particle_properties/dev/eDNAdetectionBackwards.py
oceantracker/particle_properties/util/__init__.py
oceantracker/particle_properties/util/particle_comparisons_util.py
oceantracker/particle_properties/util/particle_operations_util.py
oceantracker/particle_statistics/__init__.py
oceantracker/particle_statistics/_base_location_stats.py
oceantracker/particle_statistics/gridded_statistics2D.py
oceantracker/particle_statistics/gridded_statistics3D.py
oceantracker/particle_statistics/polygon_statistics.py
oceantracker/particle_statistics/resident_in_polygon.py
oceantracker/particle_statistics/dev/__init__.py
oceantracker/reader/DEFT3DFM_reader.py
oceantracker/reader/FVCOM_reader.py
oceantracker/reader/GLORYS_reader.py
oceantracker/reader/ROMS_reader.py
oceantracker/reader/SCHISM_reader.py
oceantracker/reader/SCHISM_reader_v5.py
oceantracker/reader/__init__.py
oceantracker/reader/_base_all_readers.py
oceantracker/reader/_base_structured_reader.py
oceantracker/reader/_base_unstructured_reader.py
oceantracker/reader/_oceantracker_dataset.py
oceantracker/reader/depricated/__init__.py
oceantracker/reader/dev/__init__.py
oceantracker/reader/dev/_base_generic_reader.py
oceantracker/reader/dev/dev_nemo_reader.py
oceantracker/reader/dev/generic_stuctured_reader.py
oceantracker/reader/dev/generic_unstructured_reader.py
oceantracker/reader/util/__init__.py
oceantracker/reader/util/dev_convert_new_schism_format.py
oceantracker/reader/util/dev_thredds_server_util.py
oceantracker/reader/util/get_hydro_model_info.py
oceantracker/reader/util/hydromodel_grid_transforms.py
oceantracker/reader/util/reader_util.py
oceantracker/reader/util/shared_reader_memory_util.py
oceantracker/release_groups/__init__.py
oceantracker/release_groups/_base_release_group.py
oceantracker/release_groups/grid_release.py
oceantracker/release_groups/point_release.py
oceantracker/release_groups/polygon_release.py
oceantracker/resuspension/__init__.py
oceantracker/resuspension/_base_resuspension.py
oceantracker/resuspension/resuspension.py
oceantracker/resuspension/depricated/__init__.py
oceantracker/resuspension/depricated/resuspension_using_bottom_stress.py
oceantracker/solver/__init__.py
oceantracker/solver/solver.py
oceantracker/solver/util/__init__.py
oceantracker/solver/util/dev_triangle_kernnal_solver.py
oceantracker/solver/util/solver_util.py
oceantracker/tidal_stranding/__init__.py
oceantracker/tidal_stranding/tidal_stranding.py
oceantracker/time_varying_info/__init__.py
oceantracker/time_varying_info/_base_time_varying_info.py
oceantracker/tracks_writer/__init__.py
oceantracker/tracks_writer/_base_tracks_writer.py
oceantracker/tracks_writer/dev_convert_compact_tracks.py
oceantracker/tracks_writer/track_writer_compact.py
oceantracker/tracks_writer/depricated/__init__.py
oceantracker/trajectory_modifiers/__init__.py
oceantracker/trajectory_modifiers/_base_trajectory_modifers.py
oceantracker/trajectory_modifiers/cull_particles.py
oceantracker/trajectory_modifiers/cull_rate.py
oceantracker/trajectory_modifiers/settle_in_polygon.py
oceantracker/trajectory_modifiers/split_particles.py
oceantracker/trajectory_modifiers/surface_float.py
oceantracker/util/__init__.py
oceantracker/util/__root_parameter_base_class__.py
oceantracker/util/basic_util.py
oceantracker/util/class_importer_util.py
oceantracker/util/cord_transforms.py
oceantracker/util/debug_util.py
oceantracker/util/dev_shared_memory_util.py
oceantracker/util/geometry.py
oceantracker/util/get_versions_computer_info.py
oceantracker/util/json_util.py
oceantracker/util/message_logger.py
oceantracker/util/ncdf_util.py
oceantracker/util/numba_util.py
oceantracker/util/numpy_util.py
oceantracker/util/output_util.py
oceantracker/util/parameter_base_class.py
oceantracker/util/parameter_checking.py
oceantracker/util/polygon_util.py
oceantracker/util/profiling_util.py
oceantracker/util/read_geometry.py
oceantracker/util/read_points_polygons.py
oceantracker/util/regular_grid_util.py
oceantracker/util/scheduler.py
oceantracker/util/setup_util.py
oceantracker/util/status_util.py
oceantracker/util/time_util.py
oceantracker/util/triangle_utilities.py
oceantracker/util/yaml_util.py
oceantracker/util/dev/OTreRunner.py
oceantracker/util/dev/__init__.py
oceantracker/util/dev/dev_random_points_in_polygon.py
oceantracker/velocity_modifiers/__init__.py
oceantracker/velocity_modifiers/_base_velocity_modifer.py
oceantracker/velocity_modifiers/terminal_velocity.py
plot_oceantracker/__init__.py
plot_oceantracker/plot_statistics.py
plot_oceantracker/plot_tracks.py
plot_oceantracker/plot_utilities.py
read_oceantracker/__init__.py
read_oceantracker/python/__init__.py
read_oceantracker/python/load_output_files.py
read_oceantracker/python/read_ncdf_output_files.py
tests/__init__.py
tests/test_reader_formats.py
tests/unit_test_master.py
tests/circle_test/__init__.py
tests/circle_test/test_base.py
tests/profiling/__init__.py
tests/profiling/profileOT.py
tests/unit_tests/__init__.py
tests/unit_tests/test_definitions.py
tests/unit_tests/unit_test_01_check-against-ref.py
tests/unit_tests/unit_test_02_param_errors.py
tests/unit_tests/unit_test_03_release_group_errors.py
tests/unit_tests/unit_test_04_features_checks.py
tests/unit_tests/unit_test_05_parallel.py
tests/unit_tests/unit_test_06_2Drun.py
tests/unit_tests/unit_test_07_ROMSgrid.py
tests/unit_tests/unit_test_80_LagrangianStructuresFTLE.py
tests/unit_tests/unit_test_90_schism56_plots.py
tests/unit_tests/unit_test_99_run_from_json.py
tutorials_how_to/A_minimal_example.py
tutorials_how_to/B_running_with_helper_class.py
tutorials_how_to/C_release_groups.py
tutorials_how_to/D_output_files.py
tutorials_how_to/E_run_using_parameter_dictionaries.py
tutorials_how_to/G_onthefly_statistics.py
tutorials_how_to/P_running_cases_in_parallel.py
tutorials_how_to/__init__.py