from obi_one.core.base import OBIBaseModel
from obi_one.core.block import Block
from obi_one.core.block_reference import BlockReference
from obi_one.core.form import Form
from obi_one.core.info import Info
from obi_one.core.path import NamedPath
from obi_one.core.scan import CoupledScan, GridScan
from obi_one.core.serialization import (
    deserialize_obi_object_from_json_data,
    deserialize_obi_object_from_json_file,
)
from obi_one.core.single import SingleCoordinateMixin
from obi_one.core.tuple import NamedTuple
from obi_one.database.db_manager import db
from obi_one.core.activity import Activity
from obi_one.core.validation import Validation
from obi_one.core.exception import OBIONE_Error

__all__ = [
    "Activity",
    "AllNeurons",
    "AfferentSynapsesBlock",
    "BasicConnectivityPlot",
    "BasicConnectivityPlots",
    "Block",
    "BlockReference",
    "rCA1CA3Inputs",
    "Circuit",
    "CircuitExtraction",
    "CircuitExtractions",
    "CircuitFromID",
    "ClusteredGroupedMorphologyLocations",
    "ClusteredMorphologyLocations",
    "ClusteredPDSynapsesByCount",
    "ClusteredPDSynapsesByMaxDistance",
    "ClusteredPathDistanceMorphologyLocations",
    "ClusteredSynapsesByCount",
    "ClusteredSynapsesByMaxDistance",
    "CombinedNeuronSet",
    "ConnectivityMatrixExtraction",
    "ConnectivityMatrixExtractions",
    "ConstantCurrentClampSomaticStimulus",
    "CoupledScan",
    "EntityFromID",
    "ExcitatoryNeurons",
    "ExtracellularLocationSet",
    "ExtracellularLocationSetUnion",
    "FolderCompression",
    "FolderCompressions",
    "Form",
    "FormUnion",
    "FullySynchronousSpikeStimulus",
    "GridScan",
    "HyperpolarizingCurrentClampSomaticStimulus",
    "IDNeuronSet",
    "Info",
    "InhibitoryNeurons",
    "IntracellularLocationSet",
    "IntracellularLocationSetUnion",
    "LoadAssetMethod",
    "LinearCurrentClampSomaticStimulus",
    "MorphologyContainerization",
    "MorphologyContainerizationsForm",
    "MorphologyDecontainerization",
    "MorphologyDecontainerizationsForm",
    "MorphologyLocations",
    "MorphologyLocationsForm",
    "MorphologyMetrics",
    "MorphologyMetricsForm",
    "MorphologyMetricsOutput",
    "MultiBlockEntitySDKTest",
    "MultiBlockEntitySDKTestForm",
    "MultiPulseCurrentClampSomaticStimulus",
    "NamedPath",
    "NamedTuple",
    "NeuronPropertyFilter",
    "NeuronSet",
    "NeuronSetReference",
    "NeuronSetUnion",
    "NormallyDistributedCurrentClampSomaticStimulus",
    "OBIBaseModel",
    "OBIONE_Error",
    "PathDistanceConstrainedFractionOfSynapses",
    "PathDistanceConstrainedNumberOfSynapses",
    "PathDistanceWeightedFractionOfSynapses",
    "PathDistanceWeightedNumberOfSynapses",
    "RelativeNormallyDistributedCurrentClampSomaticStimulus",
    "PoissonSpikeStimulus",
    "PredefinedNeuronSet",
    "PropertyNeuronSet",
    "RandomGroupedMorphologyLocations",
    "RandomMorphologyLocations",
    "RandomlySelectedFractionOfSynapses",
    "RandomlySelectedNumberOfSynapses",
    "ReconstructionMorphologyFromID",
    "ReconstructionMorphologyValidation",
    "Recording",
    "RecordingReference",
    "RecordingUnion",
    "RegularTimestamps",
    "RelativeConstantCurrentClampSomaticStimulus",
    "RelativeLinearCurrentClampSomaticStimulus",
    "SectionIntracellularLocationSet",
    "Simulation",
    "SimulationsForm",
    "SimulationNeuronSetUnion",
    "SingleBlockEntitySDKTest",
    "SingleBlockEntityTestForm",
    "SingleBlockGenerateTest",
    "SingleBlockGenerateTestForm",
    "SingleCoordinateMixin",
    "SingleTimestamp",
    "SinusoidalCurrentClampSomaticStimulus",
    "SomaVoltageRecording",
    "TimeWindowSomaVoltageRecording",
    "StimulusReference",
    "StimulusUnion",
    "SubthresholdCurrentClampSomaticStimulus",
    "ScaleAcetylcholineUSESynapticManipulation",
    "SynapticMgManipulation",
    "nbS1POmInputs",
    "nbS1VPMInputs",
    "SynapseSetUnion",
    "Timestamps",
    "TimestampsReference",
    "TimestampsUnion",
    "Validation",
    "VolumetricCountNeuronSet",
    "VolumetricRadiusNeuronSet",
    "XYZExtracellularLocationSet",
    "db",
    "deserialize_obi_object_from_json_data",
    "deserialize_obi_object_from_json_file",
    "SimplexNeuronSet", 
    "SimplexMembershipBasedNeuronSet"
]

from obi_one.database.entity_from_id import (
    EntityFromID, LoadAssetMethod
)
from obi_one.database.reconstruction_morphology_from_id import (
    ReconstructionMorphologyFromID,
)

from obi_one.database.circuit_from_id import CircuitFromID

from obi_one.scientific.afferent_synapse_finder.specified_afferent_synapses_block import (
    AfferentSynapsesBlock,
    ClusteredPDSynapsesByCount,
    ClusteredPDSynapsesByMaxDistance,
    ClusteredSynapsesByCount,
    ClusteredSynapsesByMaxDistance,
    PathDistanceConstrainedFractionOfSynapses,
    PathDistanceConstrainedNumberOfSynapses,
    PathDistanceWeightedFractionOfSynapses,
    PathDistanceWeightedNumberOfSynapses,
    RandomlySelectedFractionOfSynapses,
    RandomlySelectedNumberOfSynapses,
)
from obi_one.scientific.basic_connectivity_plots.basic_connectivity_plots import (
    BasicConnectivityPlot,
    BasicConnectivityPlots,
)
from obi_one.scientific.circuit.circuit import Circuit
from obi_one.scientific.circuit.extracellular_location_sets import (
    ExtracellularLocationSet,
    XYZExtracellularLocationSet,
)
from obi_one.scientific.circuit.intracellular_location_sets import (
    IntracellularLocationSet,
    SectionIntracellularLocationSet,
)
from obi_one.scientific.circuit.neuron_sets import (
    CombinedNeuronSet,
    IDNeuronSet,
    NeuronPropertyFilter,
    NeuronSet,
    PredefinedNeuronSet,
    PropertyNeuronSet,
    VolumetricCountNeuronSet,
    VolumetricRadiusNeuronSet,
    SimplexNeuronSet,
    SimplexMembershipBasedNeuronSet,
    nbS1VPMInputs,
    nbS1POmInputs,
    rCA1CA3Inputs,
    AllNeurons,
    ExcitatoryNeurons,
    InhibitoryNeurons,
)
from obi_one.scientific.circuit_extraction.circuit_extraction import (
    CircuitExtraction,
    CircuitExtractions,
)
from obi_one.scientific.connectivity_matrix_extraction.connectivity_matrix_extraction import (
    ConnectivityMatrixExtraction,
    ConnectivityMatrixExtractions,
)
from obi_one.scientific.folder_compression.folder_compression import (
    FolderCompression,
    FolderCompressions,
)
from obi_one.scientific.morphology_containerization.morphology_containerization import (
    MorphologyContainerization,
    MorphologyContainerizationsForm,
)
from obi_one.scientific.morphology_containerization.morphology_decontainerization import (
    MorphologyDecontainerization,
    MorphologyDecontainerizationsForm,
)
from obi_one.scientific.morphology_locations.morphology_location_block import (
    ClusteredGroupedMorphologyLocations,
    ClusteredMorphologyLocations,
    ClusteredPathDistanceMorphologyLocations,
    RandomGroupedMorphologyLocations,
    RandomMorphologyLocations,
)
from obi_one.scientific.morphology_locations.morphology_location_form import (
    MorphologyLocations,
    MorphologyLocationsForm,
)
from obi_one.scientific.morphology_metrics.morphology_metrics import (
    MorphologyMetrics,
    MorphologyMetricsForm,
    MorphologyMetricsOutput,
)
from obi_one.scientific.simulation.recording import (
    Recording,
    SomaVoltageRecording,
    TimeWindowSomaVoltageRecording,
)
from obi_one.scientific.simulation.simulations import Simulation, SimulationsForm
from obi_one.scientific.simulation.stimulus import (
    ConstantCurrentClampSomaticStimulus,
    HyperpolarizingCurrentClampSomaticStimulus,
    LinearCurrentClampSomaticStimulus,
    MultiPulseCurrentClampSomaticStimulus,
    NormallyDistributedCurrentClampSomaticStimulus,
    RelativeNormallyDistributedCurrentClampSomaticStimulus,
    RelativeConstantCurrentClampSomaticStimulus,
    RelativeLinearCurrentClampSomaticStimulus,
    SinusoidalCurrentClampSomaticStimulus,
    SubthresholdCurrentClampSomaticStimulus,
    PoissonSpikeStimulus,
    FullySynchronousSpikeStimulus
)
from obi_one.scientific.simulation.timestamps import RegularTimestamps, Timestamps, SingleTimestamp
from obi_one.scientific.test_forms.test_form_single_block import (
    MultiBlockEntitySDKTest,
    MultiBlockEntitySDKTestForm,
    SingleBlockEntitySDKTest,
    SingleBlockEntityTestForm,
    SingleBlockGenerateTest,
    SingleBlockGenerateTestForm,
)
from obi_one.scientific.unions.unions_extracellular_location_sets import (
    ExtracellularLocationSetUnion,
)
from obi_one.scientific.unions.unions_form import (
    FormUnion,
)
from obi_one.scientific.unions.unions_intracellular_location_sets import (
    IntracellularLocationSetUnion,
)
from obi_one.scientific.unions.unions_neuron_sets import NeuronSetUnion, SimulationNeuronSetUnion, NeuronSetReference
from obi_one.scientific.unions.unions_recordings import RecordingUnion, RecordingReference
from obi_one.scientific.unions.unions_stimuli import StimulusUnion, StimulusReference
from obi_one.scientific.unions.unions_synapse_set import SynapseSetUnion
from obi_one.scientific.unions.unions_timestamps import TimestampsUnion, TimestampsReference

from obi_one.scientific.validations.reconstruction_morphology_validation import (
    ReconstructionMorphologyValidation,
)

from obi_one.scientific.unions.unions_manipulations import (
    SynapticMgManipulation,
    ScaleAcetylcholineUSESynapticManipulation,
)
