.gitignore
.pre-commit-config.yaml
CITATION.cff
CODE_OF_CONDUCT.md
CONTRIBUTING.md
Dockerfile
LICENSE
README.md
pyproject.toml
uv.lock
.github/PULL_REQUEST_TEMPLATE.md
.github/dependabot.yml
.github/release-drafter.yml
.github/ISSUE_TEMPLATE/issue.yml
.github/workflows/draft-release.yml
.github/workflows/publish-docs.yml
.github/workflows/publish-pypi.yml
.github/workflows/run-tests.yml
docs/jupyter_execute/examples/nviz_quickstart.ipynb
docs/src/code_of_conduct.md
docs/src/conf.py
docs/src/contributing.md
docs/src/examples.md
docs/src/index.md
docs/src/python-api.md
docs/src/_static/coverage-badge.svg
docs/src/examples/nviz_quickstart.ipynb
docs/src/examples/nviz_quickstart.py
src/nviz/__init__.py
src/nviz/_version.py
src/nviz/cli.py
src/nviz/image.py
src/nviz/image_meta.py
src/nviz/report.py
src/nviz/view.py
src/nviz.egg-info/PKG-INFO
src/nviz.egg-info/SOURCES.txt
src/nviz.egg-info/dependency_links.txt
src/nviz.egg-info/entry_points.txt
src/nviz.egg-info/requires.txt
src/nviz.egg-info/top_level.txt
tests/__init__.py
tests/conftest.py
tests/linux_test_configuration.sh
tests/test_cli.py
tests/test_image.py
tests/test_image_meta.py
tests/test_report.py
tests/test_view.py
tests/utils.py
tests/data/file_and_folder_issues/A11/A11_111_ZS000.tif
tests/data/file_and_folder_issues/A11/A11_111_ZS001.tif
tests/data/file_and_folder_issues/A11/A11_111_ZS002.tif
tests/data/file_and_folder_issues/A11(1)/A11_111_ZS000.tif
tests/data/file_and_folder_issues/A11(1)/A11_111_ZS001.tif
tests/data/file_and_folder_issues/A11(1)/A11_111_ZS002.tif
tests/data/file_and_folder_issues/B222/.gitkeep
tests/data/file_and_folder_issues/Z99/Z99_111_ZS000.tif
tests/data/file_and_folder_issues/Z99/Z99_111_ZS001.tif
tests/data/random_tiff_z_stacks/ScanInfo.xml
tests/data/random_tiff_z_stacks/generate_data.py
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS000.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS001.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS002.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS003.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS004.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS005.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS006.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS007.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS008.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS009.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS010.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS011.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS012.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS013.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS014.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS015.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS016.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS017.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS018.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS019.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS020.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS021.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS022.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS023.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS024.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS025.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS026.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS027.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS028.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS029.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS030.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS031.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS032.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS033.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS034.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS035.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS036.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS037.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS038.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS039.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS040.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS041.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS042.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS043.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS044.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS045.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS046.tif
tests/data/random_tiff_z_stacks/Z99/Z99_111_ZS047.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS000.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS001.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS002.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS003.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS004.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS005.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS006.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS007.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS008.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS009.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS010.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS011.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS012.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS013.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS014.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS015.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS016.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS017.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS018.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS019.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS020.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS021.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS022.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS023.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS024.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS025.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS026.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS027.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS028.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS029.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS030.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS031.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS032.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS033.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS034.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS035.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS036.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS037.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS038.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS039.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS040.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS041.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS042.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS043.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS044.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS045.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS046.tif
tests/data/random_tiff_z_stacks/Z99/Z99_222_ZS047.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS000.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS001.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS002.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS003.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS004.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS005.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS006.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS007.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS008.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS009.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS010.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS011.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS012.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS013.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS014.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS015.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS016.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS017.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS018.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS019.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS020.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS021.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS022.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS023.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS024.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS025.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS026.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS027.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS028.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS029.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS030.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS031.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS032.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS033.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS034.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS035.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS036.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS037.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS038.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS039.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS040.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS041.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS042.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS043.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS044.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS045.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS046.tif
tests/data/random_tiff_z_stacks/Z99/Z99_333_ZS047.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS000.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS001.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS002.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS003.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS004.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS005.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS006.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS007.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS008.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS009.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS010.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS011.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS012.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS013.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS014.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS015.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS016.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS017.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS018.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS019.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS020.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS021.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS022.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS023.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS024.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS025.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS026.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS027.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS028.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS029.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS030.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS031.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS032.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS033.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS034.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS035.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS036.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS037.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS038.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS039.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS040.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS041.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS042.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS043.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS044.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS045.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS046.tif
tests/data/random_tiff_z_stacks/Z99/Z99_444_ZS047.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS000.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS001.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS002.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS003.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS004.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS005.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS006.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS007.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS008.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS009.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS010.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS011.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS012.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS013.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS014.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS015.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS016.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS017.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS018.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS019.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS020.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS021.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS022.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS023.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS024.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS025.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS026.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS027.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS028.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS029.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS030.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS031.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS032.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS033.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS034.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS035.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS036.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS037.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS038.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS039.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS040.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS041.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS042.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS043.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS044.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS045.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS046.tif
tests/data/random_tiff_z_stacks/Z99/Z99_555_ZS047.tif
tests/data/random_tiff_z_stacks/labels/compartment.tif
tests/data/synapse/.gitkeep