torch>=2.0.0
transformers>=4.30.0
datasets>=2.14.0
huggingface-hub>=0.16.0
openai>=1.0.0
langchain>=0.1.0
chromadb>=0.4.0
monai>=1.3.0
numpy>=1.21.0
pandas>=1.3.0
scikit-learn>=1.0.0
matplotlib>=3.5.0
seaborn>=0.12.0
tqdm>=4.65.0

[bio]
biopython>=1.79
scikit-bio>=0.5.7

[dev]
pytest>=7.0.0
pytest-cov>=4.0.0
black>=22.0.0
flake8>=5.0.0
mypy>=1.0.0
build>=0.10.0
twine>=4.0.0

[microbiome]
biom-format>=2.1.12
unifrac>=1.1

[viz]
plotly>=5.0.0
bokeh>=3.0.0
