LICENSE
README.md
pyproject.toml
requirements.txt
nucflag/__init__.py
nucflag/common.py
nucflag/main.py
nucflag.egg-info/PKG-INFO
nucflag.egg-info/SOURCES.txt
nucflag.egg-info/dependency_links.txt
nucflag.egg-info/entry_points.txt
nucflag.egg-info/requires.txt
nucflag.egg-info/top_level.txt
nucflag/breakdown/__init__.py
nucflag/breakdown/cli.py
nucflag/breakdown/run.py
nucflag/call/__init__.py
nucflag/call/cli.py
nucflag/call/io.py
nucflag/call/plot.py
nucflag/call/region.py
nucflag/call/run.py
nucflag/config/__init__.py
nucflag/config/cli.py
nucflag/config/run.py
nucflag/consensus/__init__.py
nucflag/consensus/cli.py
nucflag/consensus/constants.py
nucflag/consensus/run.py
nucflag/ideogram/__init__.py
nucflag/ideogram/cli.py
nucflag/ideogram/run.py
nucflag/qv/__init__.py
nucflag/qv/cli.py
nucflag/qv/run.py